Microcaecilia unicolor: 115463198
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Entry
115463198 CDS
T09142
Symbol
YTHDC2
Name
(RefSeq) LOW QUALITY PROTEIN: 3'-5' RNA helicase YTHDC2
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
muo
Microcaecilia unicolor
Brite
KEGG Orthology (KO) [BR:
muo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
muo03041
]
115463198 (YTHDC2)
Enzymes [BR:
muo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
115463198 (YTHDC2)
Spliceosome [BR:
muo03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
115463198 (YTHDC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
HA2_C
OB_NTP_bind
R3H
Helicase_C
DEAD
HA2_N
Ank_2
AAA_22
AAA_19
Ank
nSTAND3
ATPase
PhoH
AAA_7
AAA_23
AAA_16
SRP54
AAA_29
T2SSE
Motif
Other DBs
NCBI-GeneID:
115463198
NCBI-ProteinID:
XP_030049355
UniProt:
A0A6P7XFC6
LinkDB
All DBs
Position
2:170982888..171212332
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AA seq
1421 aa
AA seq
DB search
MSRPSSVSPRPGSAQSGPSGSGRAKGLKDIRIDEEVKIAVNIALERFRYSDQKETEFPSS
LTSTERAFIHRLCQSLGLVSKSKGKGANRYLTVKKKDGSEMAHAMMSCSLTHNTKHAVRS
LIQRFPVTNKERTELLPKTERGNVFAVEAENREMSKTSGRLNNGIPQVPVKRGGSEFDCF
RQSLPVFEKQEDIVKIIKDNKVVLIVGETGSGKTTQIPQFLLDDCYKNGIPCRIFCTQPR
RLAAISVAERVAAERGEKIGQTIGYQIRLESRVSPKTLLTFCTNGVLLRTLMAGDSTLST
VTHVIVDEVHERDRFSDFLLTKLRDVLQKHSSLKLILSSAALDVNLFLRYFGGCPVIYIQ
GRPFEIKEMFLEDILRTTGYTNKEMLKYKKEKQREEKQQTTLTEWYSAQDNIIKPESQRQ
RTVPAVPEDYDLLDDGGDTVFSQLTEKDVNCLEPWLVKEMDACLSDIWLQKDVDAFAQLF
HLILTENVSVDYRHSETSATPLMVAAGRGFSSQVEQLISMGANVHSKASNGWMALDWARH
FGQTEVVDLLESYSASLEFGNLDESSLVQADCGDLTSEDRELLKAYHHSFDDEKVDLDLI
MHLLYNICHNCDSGAILIFLPGYDEIVGLRDRILFDDKRFADNAHRYQVFMLHSNMQTSD
QKKVLKVPPPGIRKIILSTNIAETSITVNDVIFVIDSGKVKEKSFDALNHVTMLKMVWIS
KASAIQRKGRAGRCRPGICFRLFSKLRFQNMLEFQTPELLRMPLQELCLHTKLLAPINCP
IADFLMKAPEPPPTLIVRNAVQMLKTIDAMDTWEDLTELGYHLADLPVEPHLGKMVLCAV
VLKCLDPILTIACTLAYRDPFVLPTQASQKRAAMLCRKRFTAGTFSDHMALLRAFQAWQK
ARSDGWERAFCEKNFLSQATMEIIIGMRTQLLGQLRASGFVRARGGGDIRDVNTNSENWA
VVKAALVAGIYPNLVHVDRENVVLTGPKEKKVRFHPTSVLSSHSTKKIPPANGQAAAIQA
LPTDWLMYDEMTRAHRIANIRCCSVVTPVSVVIFSGPARLPSNALQEPSSFRVDGVTNDS
SDSEMEDRTTANLATLKLDEWLNFKLEPEAASLLLQLRQKWHSLFLRRMRAPSKPWSQVD
EATLRAIIAVLSTEEQSAGLQQPSGIGQRPRPMSSEELPLTSSWRSNNSRKSSAETEFSD
EPSSSERVHMKSPSPAFHQQLKYKDRGVLHPKRSADDRSDQSSVKSTDSNSYPSPCASPS
PPSSGKGSKSPSPRPNMPIRFFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESST
VYLVFSVQGSGHFQGFARMSSEIGREKSQDWGSTGLGGVFKVEWIRKESLPFQYAHHLLN
PWNDNKKVQISRDGQELEPQVGEQLLQLWDRIPLGDKNPTH
NT seq
4266 nt
NT seq
+upstream
nt +downstream
nt
atgtctcggccaagcagtgtgtccccaaggccaggcagtgcccaatcaggcccttctggt
tctggaagagctaaagggctgaaggatatccggattgatgaagaagtgaaaattgctgtt
aatattgcattggagagatttcgctatagtgatcaaaaggagactgaatttccttcatct
ttgaccagtactgaaagggcatttattcatcgactctgccagtctcttggtttggtgtcc
aaaagtaaaggaaaaggggcaaacagatatctcactgtcaagaaaaaagatggatcagaa
atggcacatgcgatgatgagttgtagtttgacccataacacaaaacatgctgtcaggagc
ttgatccagaggttccctgttaccaacaaggaacgcactgaacttctgcccaaaactgag
cgaggaaatgtgtttgctgttgaagctgagaacagagaaatgagcaagacgagtgggcga
cttaataatggcatccctcaggttcctgtgaaaaggggaggctcagagtttgactgcttt
cgacagtctttgcctgtgtttgaaaagcaagaagacattgtaaagattattaaggacaat
aaggtggttttgatcgtgggagaaactggatcaggaaagaccactcagattcctcagttc
cttctggatgattgttacaaaaatggcatcccctgtcgtatattctgcacccagccaagg
cgtttggcagctatttctgtggctgaaagggtcgctgcagagagaggtgaaaagattgga
cagacaataggctatcagatccgactggagagcagggtttctccaaagactcttctgaca
ttttgcaccaatggtgttttacttcgcacattgatggcaggagacagcacactatccact
gtgacgcatgttattgtggatgaagttcatgagagggatcgctttagtgatttcctgcta
accaaactaagagatgtcctgcaaaagcattcttctctaaaactgattctttctagtgca
gccttggacgttaatctctttttgagatactttggagggtgccctgtaatatacatacaa
ggaagaccgtttgaaataaaggagatgtttcttgaagacatattacgaacgacaggatac
acaaataaagaaatgttaaaatataagaaagaaaagcaacgagaagagaagcaacagacc
acccttacggaatggtattctgcccaagacaacatcatcaaaccggaatctcagcggcag
agaacagtgccagcagtgcctgaggattatgatctgctagatgatggaggtgacacagtg
tttagtcagctgactgaaaaagatgtgaattgcttggagccatggctggtaaaggaaatg
gatgcttgtctctccgatatttggcttcagaaagatgtggatgcttttgctcagctgttt
catctcattttaactgaaaatgtcagtgttgactacaggcatagtgaaaccagcgcaact
ccactgatggtcgctgcaggtcgaggtttctcaagtcaggtagagcagttaatcagcatg
ggggccaatgttcacagcaaagcatcaaatggctggatggctttggactgggctaggcac
tttggacagactgaagttgttgatcttcttgaatcttatagtgcctcactagagtttgga
aatctggatgaaagttctcttgtccaggcagattgtggtgaccttacttcagaggataga
gagcttctgaaagcttatcatcatagttttgatgatgaaaaagtggatttggacttgatt
atgcatcttctttataacatatgccacaactgtgattctggggcgattttgatatttttg
cctggctatgatgagattgttggcttgagagatcgtatcctctttgatgacaagcgattt
gctgataacgcccataggtatcaagtttttatgctccattccaacatgcaaacatcagac
caaaagaaggtgctgaaagttcctcctccaggaatccgcaaaataattctttctacaaat
attgcagaaacgagcatcacagtcaatgatgtcatctttgttattgactctggcaaagtg
aaagagaagtcctttgatgcattgaaccatgttaccatgctaaaaatggtatggatttca
aaagctagtgccattcaaagaaaagggagagctgggcgctgtagacctggaatctgcttc
cgcttatttagcaaactgcgatttcagaacatgttggaatttcagactcctgaacttctg
agaatgcctttgcaggaactttgtttgcacacaaaactgctagctcctattaactgccca
atcgcagattttctaatgaaagccccagaaccgcctcctactttaattgtgagaaatgct
gtccagatgctgaagactatagatgccatggatacttgggaagatctaacagaacttggc
tatcacctggcagatttgccagtggagcctcaccttggcaaaatggtgctgtgtgctgtt
gttctgaagtgtttggaccccattcttaccattgcatgtactctggcatatcgagatccc
tttgtcctaccaacgcaggcctcgcaaaaacgtgcagccatgctgtgcagaaaacgtttt
actgcagggacatttagtgatcacatggcacttctgagagctttccaggcatggcagaag
gcccgaagtgatggctgggagagggcattttgtgagaaaaactttctgtctcaggctaca
atggaaattatcattgggatgagaactcaactgcttggacagctccgagcctcaggtttc
gttagagcccgaggtggaggtgacattcgagatgtcaatactaactcagaaaactgggct
gtagttaaagctgcactcgtggctggaatttatcctaatttggtccatgtcgacagagaa
aatgtggtgctgacaggacccaaagagaagaaagttcggtttcaccccacctccgttctt
agcagccacagtacaaaaaagattcctccagcaaatggtcaagccgcagccattcaggcc
ctccccacagactggctaatgtacgatgaaatgaccagagcccacagaattgctaatatc
agatgctgttcagttgtgacacctgttagtgtggtcatattctctggacctgctagattg
cccagtaatgctctgcaggaaccatcatcatttagagtggatggtgtgactaatgatagt
agcgacagtgagatggaggataggaccactgccaacctggcaacactgaagttagatgaa
tggctaaattttaaactggagcctgaggctgctagtctgctgttgcagctcagacagaag
tggcatagtttatttttacgacgaatgcgggcaccatcgaaaccttggtctcaggttgac
gaagcaacgctccgagcaatcatagctgtcttaagtaccgaagagcaatctgcgggctta
cagcagccctctgggattgggcagagaccaaggcctatgtcttcagaagaactcccgctg
acgtcttcctggcggtcaaacaacagcaggaagagctccgcagaaactgaattctctgat
gaaccatccagttcagaaagggtccatatgaaatctccttcaccagcatttcatcagcaa
ctgaagtacaaagacaggggagttttacatcccaagcgaagcgctgatgatcggtcagat
cagtcatctgtgaaatcaactgacagcaacagctaccccagcccatgtgccagcccatct
ccgccatcttctgggaagggttcaaagtctccttcaccaaggcctaatatgccaatccgt
ttttttattatgaagagcagcaatctcagaaacttggagatctcacagcaaaaggggatt
tggtctacaacacctagcaatgagcgcaaactaaatcgtgctttttgggagagcagcaca
gtttacttggtgttttctgtccagggatcaggacatttccagggttttgctagaatgtct
tcagagattgggcgtgaaaaaagtcaggactggggctctacaggccttggaggtgtgttt
aaggtggaatggatcaggaaagagagtcttccatttcagtatgcacaccatctactgaac
ccttggaacgataacaagaaagttcagatcagcagggatgggcaggaattggaaccccag
gttggagaacagttgttgcaactatgggatcgtattcctctaggagacaaaaatcctact
cattga
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