Microcaecilia unicolor: 115466457
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Entry
115466457 CDS
T09142
Symbol
LIG1
Name
(RefSeq) DNA ligase 1 isoform X1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
muo
Microcaecilia unicolor
Pathway
muo03030
DNA replication
muo03410
Base excision repair
muo03420
Nucleotide excision repair
muo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
muo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
115466457 (LIG1)
03410 Base excision repair
115466457 (LIG1)
03420 Nucleotide excision repair
115466457 (LIG1)
03430 Mismatch repair
115466457 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
muo03032
]
115466457 (LIG1)
03400 DNA repair and recombination proteins [BR:
muo03400
]
115466457 (LIG1)
Enzymes [BR:
muo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
115466457 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
115466457 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
115466457 (LIG1)
DNA replication proteins [BR:
muo03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
115466457 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
115466457 (LIG1)
DNA repair and recombination proteins [BR:
muo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
115466457 (LIG1)
NER (nucleotide excision repair)
Other NER factors
115466457 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
115466457 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
115466457
NCBI-ProteinID:
XP_030053547
UniProt:
A0A6P7XDC5
LinkDB
All DBs
Position
3:249794922..249883664
Genome browser
AA seq
988 aa
AA seq
DB search
MQQIIGRASCWVKSGEGSWRSVMQRTIRSFFQPKEVTKVKKEECSEAVKSRTERTEESTK
SSRVVEHPLKERNGTAHCREVNSPIKRTTKKSIQVLDNDSEDEEAAGSQDVQSVTETPQR
ITGRKEPFSTSSTPQTDSTHDAASPCSSLSGSSPLTPDSALISPSGIPKRRTARKQLPKR
LLESSHGEEETKEDLDVMESSSKRQKKERDDAEAVSEKKRKVMKTEEEKVLSSEVELAEE
DKVQSSCAGKPTTHGRLEQESVKEQAKEAEPTKSTKFISSFFAPRKPAVRAENKEEHASL
KTVDPKSPGTEDKSKVAPSSSISEIDKLEATQDPVEYNPSKSHYHPLKDACWSRGQKVPY
LAVARTFERIEEESARLKNIETLSNFLRSVIAISPDDLLPCIYLCLNQLGPAFEGLELGI
GETIIMKAVAQATGRQLDKIKVEAQEKGDLGLVAESSRSTQRTMFAPPKLTVVSVFGRLK
EIARMTGSTSMNKKIDIIKAMFVACRNSEARYIIRSLEGKLRIGLAEQSVLSAIAQAVSL
TPPGQEFPPEVVDAGKGRSPDSRKAWIEEQALILKQTFCELPNYNTIIPVLLQHGIENLS
RHCHLTPGIPLKPMLAHPTKGIEEVLKRFDESAFTCEYKYDGERAQIHILESGEVFIYSR
NQENNTSKYPDIINRIPKVKKESVRSCIIDTEAVAWNPATKQIQPFQVLTTRKRKDVDAA
DIKVQVCVYAFDMLYLNGESLVKEPFARRRQLLREAFVEKDGEFLFSTFMDTSSVDEISE
FLDNSIKDSCEGLMVKTLEQDATYEIAKRSHNWLKLKKDYLEGIGDTLDLVVMGAYLGKG
KRTGTYGGFLLGAYDEDNEEYQTICKIGTGFTDEDLEKHYNFFKDHVIEKPRPYYRWDSV
TEPDHWFEPAQVWEVKCADLSISPVHKAAQGLIDDMKGISLRFPRFLHIRDDKKPEEATS
SFQVAELYKKQQQIQNTLSAEKGAEDFY
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
atgcagcagatcataggtcgggcgagctgctgggtgaagagcggagaagggagctggagg
tcagtcatgcagcgcactatcaggtcgtttttccagcccaaggaggtgacaaaggtgaag
aaagaggagtgttcagaggcagtgaaaagcagaacagaaaggactgaggagtccactaaa
agctccagggtggtagaacaccccctgaaggagaggaatggcacagcacattgcagggag
gtgaactcccctatcaaacgcaccaccaagaagtctattcaggtcctagacaacgatagt
gaagatgaggaggcagcagggagccaggatgtgcagtctgtcactgagacgccacaaagg
atcactggaaggaaggagcctttctccacatcgagcacgcctcagacagattccacccat
gatgcagcttctccttgcagtagcctatcggggagcagtcctcttacccctgactcggcc
ctcatctcaccctcaggcatcccaaaacgcagaacagctcgcaagcagctcccgaaacga
ctactagaatcttctcatggagaggaagagacaaaggaagatctggatgtgatggagtcc
agctccaaaaggcagaagaaagagagagatgacgcagaggcagtgtcagaaaagaaacgg
aaggtcatgaaaacagaagaggagaaagttctgagttcagaggtggagcttgcggaggag
gacaaagttcaaagttcttgtgcaggaaaacctacgacccacggccgattggagcaggaa
agtgtcaaggagcaggcaaaggaggctgagccaacaaagtctacaaaattcatcagcagc
ttttttgctccaaggaagcctgcagtaagggcagagaacaaagaagagcatgcctcatta
aaaacagtcgatccaaaatcccctgggacagaggacaagagcaaggtggcaccaagcagc
agtatctctgagattgacaagctagaagcaacccaggaccccgtggagtacaacccctcc
aagagccattatcatcccctaaaggatgcctgttggagccgtggtcagaaggttccctac
cttgcagtagcccgcacctttgagagaattgaagaggagtcggccaggctgaagaacatt
gagaccctaagcaacttccttcgttcggtgattgccatttccccagatgacctcctgccc
tgcatatacctctgcctgaaccagttgggccctgcctttgagggactggagctgggcatt
ggggagactattatcatgaaagctgttgcccaggctacaggccgtcagctggacaagata
aaggtggaagcacaggaaaagggggacctgggcctggttgcagaaagcagccgtagcact
cagcgcaccatgtttgcgccaccgaaactgaccgttgtcagtgtctttggcaggctgaag
gaaatagccaggatgacaggtagcacgtctatgaacaaaaaaattgatatcattaaagcc
atgtttgttgcctgcaggaattctgaggcccgttacatcatccggtctcttgaagggaag
ctgcgcatcgggctagcagaacaatctgtcctatctgccatcgcacaggcagtttctctg
acaccacccgggcaagagttccctccagaggtggtggatgctgggaagggcaggtctcct
gactcccgcaaggcctggatagaagagcaagcactgattcttaaacagacattctgtgag
ctaccaaactataacaccatcatccctgtcttactgcagcatgggattgaaaacctatct
cggcattgtcaccttacaccaggaatccctctaaagcccatgttggcacaccccaccaag
ggcatagaggaagtgctgaagaggtttgatgagtctgctttcacctgcgagtacaagtat
gatggggagcgagcccagatacatatcctggagagtggagaggtgtttatatacagccga
aatcaggagaataacaccagcaaatatccagacatcatcaaccggatcccaaaggtgaag
aaggaaagtgtgaggtcctgtatcattgacacagaggctgttgcctggaaccccgcgaca
aaacagattcagcccttccaggtccttaccacccgcaagcgaaaggatgtggatgctgca
gatatcaaagttcaagtgtgtgtgtatgcttttgacatgttatacttgaacggggagtcg
ctggttaaagaaccctttgcaagaaggcggcagcttttacgggaagcctttgtggagaaa
gatggggagttcctgttttccaccttcatggacacatccagcgtggatgagatttcagag
ttcctcgacaactccatcaaagactcctgtgaggggctgatggtaaagaccctggaacag
gacgccacatatgagatcgccaagaggtcgcacaactggttgaagctgaagaaggattac
ctggagggtataggagacacattggatctggtggtgatgggtgcttacctggggaagggg
aagcgcactggtacttatggtggcttcctgctgggagcatatgacgaggacaatgaggag
taccagaccatttgcaagataggaacgggtttcacagatgaggatctggagaagcactat
aatttttttaaggatcatgtcattgagaagccccgtccatactaccggtgggacagtgtc
acagagccagaccactggttcgagccagcacaagtgtgggaagtgaagtgtgctgatctc
tccatctctcccgtgcataaggctgcccagggattgatagatgacatgaaggggatctcc
ttacgctttcctcgcttcctgcacatcagagatgacaagaaaccagaggaggcaaccagc
agcttccaggtagctgagctgtacaagaagcaacagcaaatccagaatactttgtcagct
gagaagggagcggaagatttctattag
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