Microcaecilia unicolor: 115466719
Help
Entry
115466719 CDS
T09142
Symbol
COL2A1
Name
(RefSeq) collagen alpha-1(II) chain isoform X1
KO
K19719
collagen type II alpha
Organism
muo
Microcaecilia unicolor
Pathway
muo04510
Focal adhesion
muo04512
ECM-receptor interaction
muo04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
muo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
115466719 (COL2A1)
04518 Integrin signaling
115466719 (COL2A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
115466719 (COL2A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
muo00536
]
115466719 (COL2A1)
Glycosaminoglycan binding proteins [BR:
muo00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
115466719 (COL2A1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
115466719
NCBI-ProteinID:
XP_030054026
UniProt:
A0A6P7XLF8
LinkDB
All DBs
Position
3:complement(291176739..291485238)
Genome browser
AA seq
1489 aa
AA seq
DB search
MVSFVHPRILVLLAAAQLLSLAVVRSQEGEITDLVTCVQDGQTYNDKDVWKPEPCQICVC
DTGTILCDDIVCEEIKDCPNAEIPFGECCAICPTQQPSTSSGRQTGPKGQKGEPGDIKDV
VGPRGPPGPQGPLGEQGPRGDRGEKGEKGAPGPRGRDGEPGVPGNPGQPGPSGPPGLGGN
FAAQMTGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPTGSPGPQGFQGSPGEPGESGTSGP
MGPRGPAGPPGKSGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGVDGT
KGETGAVGAKGEAGSPGENGTPGPMGPRGLPGERGRPGPSGAAGARGNDGLSGPAGPPGP
VGPAGAPGFPGAPGSKGEAGPTGARGPEGAQGSRGEPGSPGSPGPAGASGNPGTDGIPGA
KGSAGAAGIAGAPGFPGPRGPPGPQGATGPLGPKGQQGDPGIAGFKGEQGPKGEIGPIGL
QGAPGPAGEEGKRGARGESGTAGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGVPGL
AGPKGGNGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGLSGEDGRPGPPGPLGARGQ
PGVMGFPGPKGATGEAGKAGEKGLPGAPGLRGLPGKDGETGAQGPSGPAGLAGERGEQGA
PGPSGFQGLPGPPGPPGENGKPGDQGVPGEAGAAGLVGPRGERGFPGERGSPGSQGLQGP
RGLPGTPGTDGPKGAVGAVGPAGALGPPGLQGMPGERGAAGISGPKGDRGDTGEKGPEGA
PGKDGARGLTGPIGPPGPSGPNGEKGESGPPGPIGAVGTRGAPGERGETGPPGPAGFAGP
PGADGQPGLKGEHGEAGQKGDAGAPGPQGQSGAPGPQGPTGVTGPKGARGAQGPAGATGF
PGSAGRVGPPGPNGNPGPPGPPGGAGKDGPKGVRGDAGPPGRSGDPGLQGPAGPPGEKGE
PGDDGTAGPDGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGTSGSAGERGP
PGPVGPPGLTGPSGEPGREGNPGSDGPPGRDGSAGVKGDRGETGSAGAPGAPGSPGSPGP
VGPTGKQGDRGESGAQGPMGPAGPAGARGISGPQGPRGDKGEAGEAGERGQKGHRGFTGL
QGLPGPPGSSGDQGATGPAGPAGPRGLPGPVGPSGKEGSNGHPGPIGPPGPRGRSGESGP
SGPPGLPGPPGPPGPPGPGIDLSAFAGMSQPEKGPDPLRYMRADQASSSLRQHDVEVDAT
LKSLNNQIESIRSPEGSKKNPARTCRDLKLCHSDWKSGNYWIDPNQGCTLDAIKVFCNME
TGETCVYPNPAKIPRKNWWTSKTKEKKHVWFGETINGGFQFSYGDDSFAPNTANIQMTFL
RLLSMDASQNITYYCKNSVAFMDEASGSLKKALLLQGSNDVEIRAEGNSRFTYTALEDGC
KKHTGKWGKTVIEYRTQKTSRLPIIDIAPMDIGGADQEFGVDIGPVCFL
NT seq
4470 nt
NT seq
+upstream
nt +downstream
nt
atggtcagctttgtgcatccgcggatactggtgctgctggcggctgcccagctgctttca
ctggcagtggtcagatcccaggaaggcgagatcacggacttagtgacctgcgtgcaggat
gggcagacttataatgataaagatgtgtggaagcccgagccttgccaaatctgtgtctgt
gacactggaactatcctctgtgatgacatagtctgcgaggaaattaaagactgcccaaat
gctgagattcccttcggagagtgctgcgccatctgccctacacaacagccctccacctcc
agtggtcgacaaacaggccccaagggacaaaaaggtgaacctggagatattaaagatgtg
gtaggacctcgaggacctccaggaccacagggaccattaggagaacagggaccacgagga
gaccgaggcgagaaaggggagaaaggtgcacctggaccccgaggcagagatggtgaacca
ggagtcccaggcaaccctggacaacctggcccatccggtccacctggccttggaggaaac
tttgctgctcagatgactggaggatttgatgagaaagctggaggtgcccagttgggtgta
atgcaaggaccaatgggcccaatgggaccacgaggaccaccgggccccacaggttctcct
ggacctcaaggttttcaaggcagccctggtgaaccaggtgaatctggaacatctggtccc
atgggtcctcgtggtcctgcaggtcctcctggcaaatctggtgatgatggtgaagctgga
aaacctggtaaagctggggaacgtggccctccgggccctcagggtgctcgtggctttcca
ggcacccctggtttaccaggagttaaaggtcacaggggctacccaggtgtagatggtacg
aagggtgaaactggtgctgtaggagctaagggtgaagctggttctcctggtgagaatgga
actcctggtccaatgggtcctcgtggtttgcctggggagagaggacggcctggaccatct
ggtgctgctggagcacgtggtaatgatgggctgtctggtcctgctggtccccctggacct
gttggccctgctggtgctcctggcttccccggtgctcctggctctaagggtgaagctgga
cctactggagctcgtggccctgagggtgctcagggttccaggggggaacctggtagtcct
ggctctcctggacctgctggtgcttctggcaaccctggtactgatggaatccctggagct
aaaggatcagctggtgctgctggcattgctggtgcccctggtttccctggccctcgtgga
cctccagggccccagggtgctactggtcctttgggtcctaaaggccagcagggagaccca
ggtattgctggctttaaaggtgaacaaggccccaaaggtgaaattggtcctataggtctt
cagggagcaccaggtcctgcaggtgaagaaggcaagagaggagcccggggtgaatcaggg
actgctgggccaattggtcctccaggagaaagaggtgcgcctggtaatcgtggtttccca
ggtcaggatggccttgcagggcccaaaggtgctccaggagaacgtggtgtgccaggactt
gcaggtccaaagggtggcaacggggaccccggccgtcctggagaacctggtctgcctggt
gctagaggtctcactggacgtcctggtgatgccggtcctcaaggcaaagttggaccttct
ggcttgtctggtgaggatggtcgtccaggtcctcctggcccactgggtgctcggggacag
cctggtgtcatgggattcccaggtcccaaaggtgccactggtgaagctgggaaagcgggt
gagaaggggttaccaggagctccaggtctgagaggtcttcccggaaaagatggtgagact
ggagcacagggtccatcaggaccagctggactggctggtgagagaggtgagcaaggagcc
cctggaccttctggtttccagggacttcctggtcctccaggtcctccgggagaaaatggt
aaaccaggtgatcagggtgttcctggtgaagcaggtgctgcaggtctggttggtccaagg
ggtgagcgtggtttccccggtgagcgtggttctcctggttctcaaggtctccagggccct
cgtggtctgcccggcacacctggcacagatggtcctaaaggtgccgtcggtgcagttggt
cctgctggtgcccttggaccccctggcttgcagggaatgcctggtgagcgtggggctgct
ggaatttctggtcccaaaggagacaggggagatactggtgagaaaggcccagaaggtgct
cctggtaaagatggtgctagaggtctgactggtcccataggtcctcctggcccatcaggt
cctaatggtgagaagggtgaatctggtccccctggacccattggtgctgtgggcacccgt
ggagcccctggtgaacgtggtgagactggtcctcctggcccagctggctttgctggtcct
cctggagcggatggacagccgggacttaaaggtgaacatggcgaggcaggacagaaggga
gatgctggtgctccaggacctcagggtcaatctggggctcctggtccacagggtccaact
ggtgttactggtcctaagggagctcgaggagcccagggccctgctggagctactggattc
cctggttctgcgggaagagtcggtccacctggtcctaatggaaaccctgggccacctggt
ccaccaggtggtgctggaaaagatggccccaagggggttcgtggcgatgctggtcctcct
ggccgttctggggaccctggtttgcagggacctgcagggccccctggtgagaagggtgaa
cctggagatgatggtactgctggtcccgatgggcccccaggtcctcaaggtttggcaggc
cagcgtggtattgtgggtttgccaggacaacgtggtgagagaggctttcctggtcttcct
ggcccatctggggagcctgggaaacaaggcacttcaggatctgcaggtgagcgtggtccc
cctggccctgttggaccacctggtttgactggtccatctggtgaacccggacgcgagggt
aaccctggttctgatggtcctcctggacgtgatggttctgctggtgttaagggtgaccgt
ggtgagactggctctgctggtgcacctggagctcctggttcacctggatctcctggtcct
gttggtcctactggcaaacaaggagaccgtggtgaatctggagctcaaggtccaatggga
ccagcaggccctgcgggggctcgaggcatatcaggtcctcaaggacctcgtggtgacaag
ggagaggctggtgaagctggtgagcgaggtcagaagggtcacagaggcttcactggtctc
caaggtctgcctggtcctcctggctcttctggtgaccaaggtgcaactgggcctgctgga
cctgccggtccaagaggtctccctggtcctgtcggcccttctggtaaagaaggctctaat
ggtcaccctggtcctattggtcctcctggtccccgtggtcgtagtggtgaaagtggcccc
tctggtcctcctggtctgcctggtccccctggtccccctggtcctccaggccctggcatt
gacctctctgcctttgctggcatgtctcagcctgagaaaggccctgatcctctgcgttac
atgcgcgctgaccaagcctccagcagccttcgccagcatgatgtagaggttgatgctact
ttgaaatccctcaacaaccaaattgagagcatcagaagccctgaaggtagcaagaagaac
cctgctcgcacctgtcgtgatctgaagctgtgccattctgattggaagagtggcaattat
tggattgatcctaatcaaggatgcaccttggatgccatcaaggtattctgtaatatggaa
actggtgagacatgtgtctatccaaacccagccaaaatacccagaaagaactggtggaca
agcaagaccaaggaaaagaaacatgtctggtttggggagacaattaatggaggcttccaa
ttcagctatggtgatgacagctttgcacccaacactgctaacatccagatgaccttccta
cgcctgttgtccatggatgcctctcagaacatcacatactactgtaaaaacagcgttgcc
ttcatggatgaagcctctggcagcctgaagaaggctctcttgttacagggatccaatgat
gtagagatcagagcagagggcaatagccgatttacttacactgccttggaagatggctgc
aagaaacacactggcaaatggggtaagacagtgattgaatatcgaacgcagaagacatca
cgcctacccatcattgacattgcacctatggatattggcggagctgaccaggaatttggc
gttgacattggcccagtctgctttttataa
DBGET
integrated database retrieval system
