Microcaecilia unicolor: 115470395
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Entry
115470395 CDS
T09142
Symbol
COL13A1
Name
(RefSeq) collagen alpha-1(XIII) chain isoform X1
KO
K16617
collagen type XIII alpha
Organism
muo
Microcaecilia unicolor
Brite
KEGG Orthology (KO) [BR:
muo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
muo00536
]
115470395 (COL13A1)
Glycosaminoglycan binding proteins [BR:
muo00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
115470395 (COL13A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
115470395
NCBI-ProteinID:
XP_030059388
UniProt:
A0A6P7Y3H0
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Position
5:complement(162242912..163267076)
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AA seq
727 aa
AA seq
DB search
MEEEKGCKGAGRGALGRGCGVAPGKKAEERCRRCPGLLSLGFGVVSLLSLALSLLGHIRT
SNLQSRVLHLEEERYVQLSALLSADQMETAILGRVDQLLEEKLRSHLPKLRQSRDAPQRC
SCPPGPPGSKGKRGHNGEPGLPGPIGRPGFPGEKGGLGIPGRMGQKGHPGEKGVPGEPGM
SIIGPRGPPGQPGTRGFPGFPGPIGLDGKPGHTGQKGEKGNMGPPGSKGQHGSSGQKGEK
GHCGDYTHRDHLGITYAALRSNQIITLKGEQGQAGLQGPPGLPGPPGPLGPPGNPGEPGQ
IGPSGKAGEPGTPGKDGMGLPGYPGPKGEPGTPGVKGDKGETGNALGGFKGEPGPPGLPG
PPGPKGETGDFGQTGIPGPQGEKGEPGSAGEHGPPGPRGPKGDTGKTEVTEYNGNINEAL
QEIRTLALMGPPGLPGPAGPPGPQGLTGQKGEIGLPGPPGHDGEKGPRGKPGELGPSGPQ
GPPGKDGLPGSKGEPGLTGLPGPKGDKGEEGHMGSPGLDGPSGEKGEQGDQGMPGTVGLP
GPIGPPGLTGEKGDSGEKGDPGNSLSGPAGPPGSDGSPGPMGPPGLPGPKGEAGVDGVKG
EKGSMGDKGDRGPLGLPGASGFDGRPGPPGTPGPIGVPGLAGPKGERGGKGDPGFAGLMG
PPGHPGIHGPPGEKGNRGERGKKGSRGPKGDKGDQGAPGLDAPCPLGDDGLPVQGCWNKK
KGLLTAL
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atggaggaggaaaagggctgcaaaggtgctggccggggtgccttagggagggggtgtgga
gttgcccccgggaaaaaggctgaagagaggtgcagaaggtgtcctggactgctcagtttg
gggtttggggtggtgtctctgctttctctggctctcagcctcttgggccacattaggact
tcgaacctacagtccagggttttgcatttggaagaggaaagatacgttcagctctctgct
ttgctctctgccgaccaaatggagacagctattttgggaagagttgaccaactgctagaa
gagaaattgaggtctcatttaccaaaactgcgacaatctcgagacgccccccagagatgc
agctgcccaccaggaccacctggttcaaagggcaagagaggacacaatggagaaccaggg
ctgcctggcccaattggaagaccaggctttccgggagaaaaaggtggtcttgggatccca
ggacggatgggacaaaaggggcatcctggtgagaagggagttccaggagaacctggcatg
tccatcataggaccccgtgggcctcctggtcagcctggaactagaggatttcctggattt
ccgggcccaatcggattagacggcaagccaggtcacactggacagaagggggagaaagga
aatatgggtcctcctggttcaaaaggacagcatggatcttcaggacaaaagggagaaaag
ggtcattgtggggattacacgcacagggaccacttgggcatcacctatgcagccctgcgc
tccaatcagatcataacattgaagggtgaacaaggacaggctggcctccagggtccacca
gggctgcctggccctccaggaccattgggacccccaggaaatccaggagagcctggtcag
attgggccatccggtaaagcaggagagccaggtacacctggcaaggatggaatgggttta
cctggatatcctggaccaaagggtgagccagggaccccaggagtaaagggagataaagga
gaaactggtaatgcgcttggtggatttaaaggggaacctggccctccagggctccctggg
cccccaggaccaaagggagaaactggtgattttggccagactggaataccaggaccacag
ggagaaaagggagagcctggatcagctggagaacatggtccccctgggccaaggggtcca
aagggagacacagggaagacagaagtgacggagtataatggaaacatcaatgaggccctc
caggaaatccgaacattagccctcatgggaccgcctgggcttccagggcctgcaggaccc
ccagggccacaaggactaactggacaaaagggtgaaatcggcttgccaggcccacccggc
catgatggagagaaggggcctcgaggtaagccgggagaattgggaccttctggtccacaa
gggcctcctggaaaagatggacttcctgggtcaaaaggagagccagggctcactggattg
ccaggaccgaagggcgataagggtgaggaaggacatatgggttcaccgggtctcgatggc
ccatctggtgagaaaggagaacaaggtgaccaagggatgccagggacagtagggcttcca
ggcccaataggacctccaggacttacaggagagaaaggagattctggagaaaaaggagac
ccaggaaactcattgtctgggcctgcaggacccccaggatcagatgggtctcctgggcct
atgggtcctccgggtctcccagggcctaagggagaagcaggggtcgatggagtgaaagga
gagaagggcagcatgggtgacaaaggagaccgaggtccactggggttgcctggtgcttca
ggttttgacggcaggcctggaccaccgggtactccaggaccaattggagttccaggacta
gcaggaccaaagggagaaaggggtggtaaaggagaccctggatttgcaggactaatggga
ccacctggacaccccggtatacatggaccacctggtgaaaaaggaaatcgaggggagagg
gggaagaaaggctctagagggcctaaaggggataagggagaccaaggagcgcctggatta
gatgcaccctgtccattgggtgatgatggcttaccagtgcagggttgctggaataagaag
aagggcctgttaacagctctctga
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