Microcaecilia unicolor: 115476526
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Entry
115476526 CDS
T09142
Symbol
PABPC1L
Name
(RefSeq) polyadenylate-binding protein 1-like isoform X1
KO
K13126
polyadenylate-binding protein
Organism
muo
Microcaecilia unicolor
Pathway
muo03015
mRNA surveillance pathway
muo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
muo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
115476526 (PABPC1L)
09123 Folding, sorting and degradation
03018 RNA degradation
115476526 (PABPC1L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
muo03019
]
115476526 (PABPC1L)
03041 Spliceosome [BR:
muo03041
]
115476526 (PABPC1L)
Messenger RNA biogenesis [BR:
muo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
115476526 (PABPC1L)
mRNA cycle factors
Stress granule specific factors
115476526 (PABPC1L)
Spliceosome [BR:
muo03041
]
Complex C
Other components
Complex C specific factors
115476526 (PABPC1L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_Nup35
RRM_occluded
RRM_RdRP1_2
DUF6262
Motif
Other DBs
NCBI-GeneID:
115476526
NCBI-ProteinID:
XP_030068801
UniProt:
A0A6P7YW41
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Position
8:223313396..223378670
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AA seq
648 aa
AA seq
DB search
MNASGPGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVSTRRSLGYAYINFQ
QPADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFS
AFGNILSCKVVCDEHGSRGYGFVHFETHEAASRAIETMNGMLLNDRKVFVGHFKSRRERE
AEYGARVMEFTNVYIKNFGDDMDDKRLKEIFSKFGKTMSVKVMMDETGHSRGFGFVNFEN
HGEAQQAVAEMNGKEINGRVVYVGRAQKKIERQSELKRKFEQMKQDRISKYQGVNLYVKN
LDDGIDDDKLRREFSPYGTITSAKVMTESGHSKGFGFVCFSSPEEATKAVTEMNGRIVST
KPLYVALAQRKEERKAILTNQYMQRVATMRALPAPLLGSFQQPSGYFLPAVPQPQSRAFY
TPNPIAPVRPAPRWTAHPSRPQMATLKDVTPTTVFPGGDLLLNYHTAAPVMRASAPRRVP
ANISTMRQASTQVPRVPPQNQRVVNIGTQTVGARTTVAPTQIRVVPQYKYSTAMRNTQQV
GSGMQIPVQILEPAVLVQGQEPLTASILAAAPPQEQKQLLGERLYPLIHSMHSALAGKIT
GMLLEIDNSELLHMLESPESLQAKVEEAVAVLQAHQAKESQKTVPTLI
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atgaatgcaagtggcccgggatatcctttagcctctctctatgttggtgatctgcaccct
gatgtcactgaagctatgttgtatgaaaaattttcacctgctggaccaatcttgtccatc
agagtttgtcgtgatgtctccacgcgtcgatctcttggatatgcctacataaattttcag
cagcctgcagatgcggagcgtgctttggacaccatgaattttgaagtaataaaaggcagg
cctataagaattatgtggtctcagcgtgacccaggtcttcggaaatcaggcgttggaaat
gtatttatcaaaaatctcgatgagtccatcgacaacaaagccttgtatgataccttctca
gcttttggaaatattctttcatgcaaggtagtctgtgatgaacatggatccagaggttat
ggttttgttcactttgagacacatgaagcagcaagtcgtgctattgaaaccatgaatggg
atgctactgaatgatcgcaaagtatttgttggccattttaagtcccgtcgagaacgagaa
gcagagtatggtgctagagtgatggaatttaccaatgtctacatcaagaattttggtgat
gatatggatgacaagcggcttaaagaaatattttccaaatttgggaaaacgatgagcgtg
aaggtgatgatggatgaaactggtcattccaggggctttggatttgtcaacttcgaaaat
catggtgaagcacagcaggctgtagcggaaatgaatggcaaagaaataaatggccgagta
gtttatgttggccgagcacagaagaagatagaacgccagagtgagctgaagcgcaagttt
gaacaaatgaaacaggacagaataagcaaataccagggtgtaaacctgtatgtgaaaaat
ttggatgatggtatagatgatgataaactgagacgggaattttctccttatggtaccatt
acaagtgcaaaggtgatgacagaaagtggacacagcaaagggtttggctttgtgtgtttt
tcctccccagaagaggctacaaaggccgtcactgaaatgaatggacgaattgtgagtaca
aagccgctctatgttgctcttgctcagcggaaagaagaaaggaaggcgattttgaccaac
caatatatgcagagggtggccactatgagagcgttgcccgctcctcttcttggctcattc
cagcagccctccggctactttttgcctgctgttccacagccacaaagtagagctttctac
actcctaatcctattgctcctgtccgtcctgcacctcggtggactgcgcacccatccagg
cctcagatggcaaccctgaaggatgtgacgccgacgacagtgtttcctggtggtgatctg
ctgttgaactaccatacagccgctccagtgatgcgagcgtcagctccgagacgtgtgcct
gccaatattagcactatgaggcaggcatcgacgcaggtgcctcgggttccaccccagaat
cagcgagtggtcaatataggtacacagacagttggtgctcgcacaactgtggcccccaca
caaattcgtgttgttcctcagtacaaatattctacggccatgcggaacacacagcaggtc
ggaagcggaatgcagattccagttcagattttggagccggctgttctggtacagggtcag
gagccactgactgcatcaattcttgctgcagccccccctcaggagcagaaacagctgcta
ggtgaacgactttacccccttatccattccatgcattcagcattggctggcaagatcaca
gggatgctactggaaatagataattctgagcttctgcacatgcttgagtctccagaatct
ctacaggcaaaggttgaagaagctgttgcagttctccaagcacatcaggccaaagaaagt
cagaagactgtccccaccctcatctag
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