Mucilaginibacter sp. PAMC 26640: A0256_06270
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Entry
A0256_06270 CDS
T04335
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
mup
Mucilaginibacter sp. PAMC 26640
Pathway
mup03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mup00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A0256_06270
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mup03019
]
A0256_06270
03400 DNA repair and recombination proteins [BR:
mup03400
]
A0256_06270
Enzymes [BR:
mup01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A0256_06270
Messenger RNA biogenesis [BR:
mup03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A0256_06270
DNA repair and recombination proteins [BR:
mup03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
A0256_06270
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HTH_40
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
GerE
Sigma70_r4_2
HEM4
HTH_37
HTH_23
Motif
Other DBs
NCBI-ProteinID:
AMR31057
LinkDB
All DBs
Position
complement(1446736..1448880)
Genome browser
AA seq
714 aa
AA seq
DB search
MTPLEALQKYFGYSKFRHSQEAIIQHVLNKQDVMVLMPTGGGKSLCYQLPAVLLNGLTIV
ISPLIALMKDQVDSLNLSGIPAAFLNSSQSPEEQKDIAIHLKNNELRLLYVAPERLFGKD
DRLMVFLKTLHVVQIAIDEAHCISQWGHDFRPEYLMLAGLKKQFPGVPVIALTATADKLT
QKDILNKLNLHQPKVFVSSFNRANITYRVNPKKNSFNQLINFLDQRKDQSGIIYCLSRKS
TESLADDLKHAGFAAEAYHAGLTNETKAKNQEAFLRDDVKIIVATIAFGMGINKSNVRWV
VHVDLPKNIEGYYQETGRAGRDGLASDALLLYSPGDAMKLKGFAQVENNPEQSAIMLKKL
DDMVDYCQLHACRRQYLMQYFDEAFPDNCGSCDFCLSEFVKFDGTLIAQKAFSAVARLKE
RFGANYVVDFLRGSRSEKIREEHKQLKTYGAGADIAKADWQRYVRELIAMGYFRLTDDGY
ATLKLTPKAEPVLKGLETVALISSQTTDERQAETLDFEAELLSNLHQRRQEVSIMENLPA
YIILSDPTLLEIATYLPQKLDELRLISGFGDIKLARYGREFLDIVTDYCKAKGLESRMGQ
KSVKRERKPRTDKVPETAKTTLALFRQGRTIAEIAKERGLSPITIENHLGNFVQTGELDV
LALVKEDKIPAIKDAIASYGNERLAPLKEVLGEDYTYGEIRAVVSWMNKKTTAQ
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atgacaccactagaagcccttcaaaaatattttggttacagcaaattcaggcactcccag
gaggccattattcagcatgttttaaacaaacaggatgtgatggtgctgatgcccaccggg
ggtgggaaatctttatgctaccagttgcccgctgttttattgaacggtttaactatcgtg
atttcccctttgatcgccttaatgaaggaccaggtagacagcctgaatctgagtggcatc
cctgcagcatttttaaactccagccaatcgcccgaggagcagaaagacatcgccatccat
ttaaaaaataacgagctccgcttactttatgtggccccggagcgactcttcggcaaagac
gaccgcctaatggtttttctgaaaacattgcacgtagtgcagatagctatcgacgaagcg
cattgtatctcgcaatgggggcatgatttccggccggaatatctcatgctggcggggttg
aaaaaacagtttccgggtgtaccggtaattgccttaacggctactgctgataagcttaca
caaaaggacatccttaataagctcaacctgcaccaacccaaagtatttgtatcctcattt
aaccgtgctaatattacttaccgcgtaaacccaaaaaagaatagctttaaccagctcatt
aatttcttggaccagcgcaaggaccaatcgggcattatctactgcctgtcgcgcaaatca
acagaatcattggccgatgatctgaagcatgccggttttgctgccgaagcatatcatgcc
gggttaacaaacgaaactaaagccaaaaaccaggaagcatttttgcgggatgatgtaaag
atcattgtagctaccattgcttttgggatgggtatcaataaatcaaacgtgcgctgggta
gtgcacgtagacctgcccaaaaatattgagggctactaccaggaaaccggtcgtgctggc
agggatggtttggcttctgatgccttgctgctttattctcccggtgacgctatgaaactg
aaaggttttgcgcaagtggagaataacccggagcaaagcgcaattatgctgaaaaagctg
gacgatatggttgattattgccagttgcatgcatgccgccgccaatacctgatgcaatat
tttgatgaggctttcccggacaactgcggctcctgcgatttttgcctcagcgaatttgta
aaatttgatggtacgctgatcgcgcagaaagccttttcggcagtggcaagattgaaagag
cgcttcggcgccaactatgtagttgattttttaaggggatcgcgcagcgagaagatccgc
gaggaacataagcagttaaaaacctatggggctggtgcagatattgccaaagccgactgg
cagcgttacgtgcgcgaattgattgcgatgggttacttccggcttacggatgatggctac
gctactttaaagcttacaccaaaagctgaaccggttttaaaaggactggaaacagtagcc
ctgatctcttcacaaacaacggatgaaaggcaagcagaaacgcttgattttgaggcagaa
ttgctcagcaaccttcaccaacggcgacaggaggtctccattatggaaaacctgccggcg
tacattattttatctgatcccaccctactggaaatagccacctacctgccgcaaaaactg
gatgagcttaggctgatctcgggttttggtgacatcaaactggcgcgttatggccgggaa
ttcttagatattgttactgattattgcaaggccaaaggtctggaatcgcgcatgggtcaa
aaatcggtcaaacgcgaaaggaaaccccgcacggataaggtgccggaaacagcaaaaact
accctggctttatttaggcaggggcgtaccatcgcagaaattgcaaaggaacgcggtctt
agtcccatcacgattgaaaatcatttaggaaattttgtacaaaccggagaactggatgtg
cttgcccttgttaaggaagataagatccccgctataaaagatgccattgcaagctatggt
aatgaacgactggcacctttaaaagaagtgctgggcgaagattacacctacggggagatc
agggcagtagtttcgtggatgaataaaaaaacaacagcgcaatga
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