Musa acuminata (dessert banana): 103971985
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Entry
103971985 CDS
T03447
Name
(RefSeq) zinc finger CCCH domain-containing protein 40
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
mus
Musa acuminata (dessert banana)
Pathway
mus03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mus00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103971985
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mus03041
]
103971985
Spliceosome [BR:
mus03041
]
Complex B
Other components
Prp19-related factors
103971985
Complex C
103971985
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
zf-CCCH_RBM22
RRM_1
Torus
zf_CCCH_4
zf-CCCH
zf-CCCH_12
zf-CCCH_2
RRM_YTH1
zf-CCCH_3
RRM_3
zf-CCCH_4
RRM_occluded
zf-CCCH_PARP12
zf-CCCH_10
Motif
Other DBs
NCBI-GeneID:
103971985
NCBI-ProteinID:
XP_009384438
UniProt:
A0A804L9H6
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All DBs
Position
BXJ2-11:29804849..29809590
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AA seq
471 aa
AA seq
DB search
MAHRLLRDAQADGWERSDFPIICESCLGDNPYIRMTKADYDKECKICKRPFTVFRWRPGR
DARYKKTEICQTCCKLKNVCQVCILDLEYGLPVQVRDTALAINSNDAIPKSDVNREYFAE
EHDRKARAGIDYESSYGKVHPNDTILKLQRTTPYYKRNRAHVCSFYMRGECTRGAECPYR
HEMPETGELSQQNIKDRYYGVNDPVALKLLSKAGEMPSLEPPEDESIKTLYVGGLDARVS
EQDLRDNFYAHGEIESIRMVLQRACAFVTYTTREAAEKAAEELVNKLVIKGLRLKLMWGR
PQAPKPEGETQDDDAARQGLVAHGGMLPRAVISQQQSNQQPLPPGTETHQQQQPNYFNIP
APPQAARTFYPSMDPQRMGAVIQSQGGSDDKTGSEKQQGQQAPNVQGHAYPMVPPHLQGQ
YPHYYPPYGYMAPPPPPYQQQYPPYQSMMSRPPPLAPPAMQQYPQGPPGPS
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atggcgcatcggctgctgagagacgcccaagccgacggatgggagcgttccgacttcccc
atcatctgcgagtcctgtctcggcgacaatccctacatccgaatgacaaaggctgactat
gataaggagtgtaagatctgcaaacggccttttacagtcttcagatggaggcctggacgt
gatgcaaggtacaagaagacagagatctgccagacatgctgcaagctgaagaatgtttgc
caggtgtgcatccttgatcttgaatacgggttgccagttcaggttcgggacactgctctt
gcaatcaattctaatgatgccatcccaaagagtgatgtgaatcgggagtactttgctgaa
gagcatgaccgcaaggccagagctggcatagattatgagtcttcatatgggaaggtgcat
ccaaatgacacgatcttaaagcttcaaaggacaacaccatattacaaaagaaatcgagca
catgtttgtagcttttatatgcgtggtgaatgcactcgtggagctgaatgtccatatcga
catgaaatgcctgaaactggtgaattatctcagcagaacataaaagatcgatactatgga
gtgaatgatcctgttgccctaaagcttctaagcaaggctggtgagatgccatctctggag
cccccagaagatgagagtataaaaaccctgtatgtcggtggccttgatgcccgagtctct
gagcaagatctgagggataacttctatgcccatggtgagattgaatccatcaggatggtg
cttcagcgagcatgtgcatttgtaacctacacgacaagagaagcagctgaaaaagcagca
gaggagcttgtcaacaagctagtcatcaagggccttcgtttgaagttgatgtgggggaga
ccacaggcaccaaaaccagagggtgaaacacaagatgacgatgctgcaaggcaagggctt
gttgcccatggagggatgctcccaagggctgtaatatctcagcagcagagcaaccagcaa
cctctaccaccaggcactgagactcatcagcagcaacaacctaactatttcaacatccct
gcaccaccacaagctgcacggacattctacccatccatggatcctcagaggatgggtgct
gtaatccaatcgcagggaggtagcgatgacaaaactggatcagaaaagcagcaagggcag
caagcaccaaatgttcaggggcatgcttatcctatggttcctccacatcttcagggccag
tatccacattattatccaccatacgggtatatggccccacccccaccaccttatcagcag
cagtatcccccttaccagtcgatgatgtcccgaccacctccactggcaccacctgcaatg
cagcaataccctcaagggccacctggaccatcgtaa
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