Musa acuminata (wild Malaysian banana): 103978015
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Entry
103978015 CDS
T03447
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
mus
Musa acuminata (wild Malaysian banana)
Pathway
mus03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mus00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103978015
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mus03041
]
103978015
03009 Ribosome biogenesis [BR:
mus03009
]
103978015
Enzymes [BR:
mus01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103978015
Spliceosome [BR:
mus03041
]
Complex A
U2 snRNP components
U2 related factors
103978015
Complex B
103978015
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
103978015
Ribosome biogenesis [BR:
mus03009
]
Eukaryotic type
90S particles
Helicases
103978015
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
SRP54
ABC_tran
nSTAND3
ResIII
Flavi_DEAD
T2SSE
AAA_30
AAA_7
Motif
Other DBs
NCBI-GeneID:
103978015
NCBI-ProteinID:
XP_009391988
UniProt:
A0A804IBA7
LinkDB
All DBs
Position
3:9419691..9425452
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AA seq
726 aa
AA seq
DB search
MSTERKRKVSLFDVVDDTSVSVKLGKANGSLSAKTAALPPGVNRWSGRPYSQRYHEILEK
RKTLPVWQQKEEFLHVLKANQTLILVGETGSGKTTQIPQFVLECEDLGKRPMVACTQPRR
VAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSHRTILKYLTDGMLLREAMADPLLERYK
VIILDEAHERTLATDVLFGLLKEVLRNRPDLKLVVMSATLEAEKFQGYFSGAPLMKVPGR
LHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEINNM
GDQVGPVKVVPLYSTLPPAMQQKIFEPAPAPLEEGGPPGRKIVVSTNIAETSLTIDGIVY
VIDPGFSKQKVYNPRIRVESLLVSPISKASAHQRAGRAGRTQPGKCFRLYTERSFKNDLQ
EQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDGNL
TKLGELMSEFPLDPQMAKMLVVSPEFNCSNEIVSISAMLSVPNCFLRPREAQKAADEAKA
RFGHIDGDHLTLLNVYHAYKQNSEDSSWCYENFINQRTLKAADNVRQQLVRIMARFNLKL
CSTDFNSRDYYINIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSTCLDHKPEWVI
YNEYVLTSRNFIRTVTDIRGEWLIDIAPHYYDLSNFPSCEAKRVLERLYNKRDKEKGESK
TRNKPL
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacagaaaggaagaggaaggtgagcctcttcgacgtggtggacgacacttccgtg
tccgtgaagctgggcaaggcgaacggatccttatccgctaagacggcggcgcttccgccg
ggggtaaaccgctggagcggtcggccctactcgcagaggtaccacgagatcctggagaag
aggaagaccctcccggtatggcagcagaaagaagagttcttgcacgtattgaaggccaac
cagactctgatcttggtcggagagaccggcagtggtaaaacaactcagattccccagttt
gtcttggaatgtgaggacttgggcaaacgcccaatggttgcttgcactcagcctcgaaga
gtcgctgcaatgtctgtttctcgtcgagttgctgaggagatggatgtaacaataggagaa
gaagttggttatagcatccgatttgaagattgcagcagccacaggactattttgaagtac
ttaactgatggtatgcttttaagagaagcaatggctgatccacttttggagagatataag
gtgataattcttgatgaggctcatgaacgaacattagcaaccgatgtcttgtttgggctg
ctgaaagaagtactgagaaatagacctgatttgaagctagtggtaatgagtgcaacgctc
gaggctgagaagttccagggttactttagtggggcccctttaatgaaagtacctggtaga
ttgcatccagtggaaattttctacacacaagagcctgaaagagattacctggaagctgcc
attcgaactgttgtacagatacacatgtgtgaaccttcaggtgacatacttgtttttctc
actggagaggaagaaatagaagatgcatgtaggaaaataacaaaggagatcaataatatg
ggtgaccaagttggccctgtgaaagtggtgcctttgtattcaactttgcccccagccatg
cagcagaagatatttgaacctgcaccagcgccactggaggaaggtggcccaccgggacga
aaaattgtggtgtcgacaaacattgcagaaacatcattgaccatcgatggcattgtttat
gttattgaccctggtttctcaaaacaaaaggtgtacaacccacgaatacgggtggaatct
ttgctcgtctctccaatatcaaaggcaagtgcgcatcaaagagcaggacgtgctggtaga
acccaaccaggaaaatgttttagactttacacagagagaagttttaaaaatgacctgcaa
gagcaaacatatccagaaattctccggtctaatttggcaaatactgttcttaccttgaag
aaacttgggattgatgatctagttcattttgactttatggatcctcctgctcctgaaaca
ttgatgcgggcacttgaggtcttgaattacctaggtgcacttgatgatgatggcaacttg
actaagttaggtgaacttatgagcgagtttcccctggatcctcagatggcgaagatgttg
gttgtgagtccagagttcaattgttccaatgagatcgtgtcaatatctgcaatgctctca
gtacccaattgctttctccggcctagggaggctcagaaagctgcagatgaagctaaagct
cggtttggccacatcgatggggatcacctaacactgttgaatgtatatcatgcatataaa
caaaatagtgaagattcttcatggtgttatgaaaattttattaaccaaaggactttaaag
gctgctgacaatgtgagacaacagctcgtgcggatcatggctagattcaacctgaaacta
tgcagtacagacttcaacagccgtgattattacattaacatcaggaaggcgatgcttgca
gggtacttcatgcaggtagctcatcttgagagaaccggacactatttgacggtgaaggac
aatcaggttgttcacctccatccatcaacctgcctggatcataagccggaatgggtcatc
tacaatgagtatgtcttgaccagtaggaactttattcgcacagtgacagacattcgagga
gagtggttgattgatatagctcctcactattatgatctgagcaacttcccctcctgtgag
gcaaaacgagtgctggaaaggctgtataataaacgtgacaaagagaagggggagagcaag
actagaaataagcctttgtag
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