Musa acuminata (dessert banana): 103978825
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Entry
103978825 CDS
T03447
Name
(RefSeq) probable RNA helicase SDE3 isoform X1
KO
K18422
helicase MOV-10 [EC:
5.6.2.5
]
Organism
mus
Musa acuminata (dessert banana)
Brite
KEGG Orthology (KO) [BR:
mus00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mus03019
]
103978825
03036 Chromosome and associated proteins [BR:
mus03036
]
103978825
Enzymes [BR:
mus01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
103978825
Messenger RNA biogenesis [BR:
mus03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
103978825
Chromosome and associated proteins [BR:
mus03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Other miRNA pathway proteins
103978825
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
MOV-10_beta-barrel
AAA_30
AAA_19
ResIII
UvrD-helicase
Mg_chelatase
UvrD_C
AAA_22
SLFN-g3_helicase
AAA_16
ATPase_2
DEAD
PhoH
Helicase_RecD
AAA
AAA_7
SNF2-rel_dom
UvrD_C_2
nSTAND3
Terminase_6N
AAA_5
Motif
Other DBs
NCBI-GeneID:
103978825
NCBI-ProteinID:
XP_009393039
UniProt:
A0A804IGM0
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All DBs
Position
BXJ2-3:40156900..40162928
Genome browser
AA seq
955 aa
AA seq
DB search
MGTIGEKDWDDEYSEISEKPEVEFLDYEDDKSLHSFDPLEGPVQITSPFPFVNGKPQSAF
IGETSADSISIKNTTSDPIELWSIRIFSSNPEDSYILSMMKPPADNADMEARRSFVGSTY
LEDRVLQPEQTLTIWLSCKPTDIGLHTSVLHFDLEYEKVERVVFLLAEDKVSQALFSDKP
YRASSRRKMFDNDRYVAGSRPPRAHTQGIRRYRLPPFDIPRDLREIIENKQVPDVITEGL
NRKNYAKFFSTLLVMEEINLEEEMRAYDMECVAMKRRGNYLLSLEVPGLAERRPSLVYGD
YILAQLSSDSADDDRLPYQGYIHRVEADEIYLRFDRSFHHKHGEDDVYNVSFTYNRVNMR
RLYQAVHAAENLGIDLLFPSESHRRRVIKGSSFKPFNPYINREQARAVEMILGCRGSHPY
IIYGPPGTGKTMTLVEAILQLYTTRTNARILVCASSNSAADHVLEKLLDKDGLGVQESEV
FRLNATSRAYEDVKPDFIRFCFFDHMVFKCPPLKALLRYKIIISTYMSVSLLYAEGIHKG
HFSHILLDEAGQASEPETMIPISNLCARDTVIVLAGDPMQLGPVIYSRKAENYGLGKSYL
DRLFECDYYGSSDENYVTKLVRNYRCHPAILDLPSKLFYKGELIACKEDTVSSIYEYADL
PNKAFPVLFVGIQGCDEREGNNPSWFNRIEASKVVEIIRKLRRNTDVNEDDIGVITPYRQ
QVLKLKKALESLELPELKVGSVEQFQGQEREIIIISTVRSTVKHNDFDRAHNLGFLSNPR
RFNVAITRAKSLLIIVGNPHIICKDHHWNKLLRHCADNGSNIGCPLPSPERDDHTNDEST
EYNYEQNVQHEDGRSDMPSEYQNNVEWNDSGLKTSTDVVKWGDIVIEATGWEDDDASEPY
SKSESNQNVHSSNFGRGDEPEENSNSLASGSHGWSDEAYKPRLAEKENEWSDGWN
NT seq
2868 nt
NT seq
+upstream
nt +downstream
nt
atgggcaccatcggtgaaaaagattgggatgatgagtactcggagatcagtgaaaagccg
gaggttgagttcttggattacgaggatgacaaatctcttcacagttttgatccgcttgaa
ggtcctgttcaaatcacaagtccttttccctttgttaatgggaaaccgcagtctgccttt
atcggagaaacatcagcagattcaatcagtatcaagaacacaaccagtgaccctatagaa
ctatggagtattaggattttctcatctaatccagaggacagctacatcctgtcaatgatg
aagcctccagcagataatgctgatatggaagcaaggcgtagctttgttgggtcaacgtat
ttggaggatagggtgcttcagccggaacaaactctcacgatttggctgtcttgcaagcca
acagatatcgggctgcatacttctgttttgcattttgacctggaatatgagaaagttgaa
cgtgtggtctttctactagcggaagacaaggtctcacaggctttgttctctgacaagcct
tatagagcatcgtcacggaggaaaatgtttgataatgatcggtatgtggcaggatctcgt
ccacctcgggcacatacgcaggggattcgcagatacaggcttcctccgtttgatataccc
cgagatttacgtgaaattattgagaataaacaggttcctgatgtgattacggaaggctta
aataggaagaactatgcaaagtttttcagcaccctccttgtcatggaagaaattaatttg
gaggaggagatgagagcatatgacatggagtgtgtggccatgaagagaaggggcaactat
ttgttgtcccttgaggtgcctggattggctgagagaagaccctcactagtttatggtgac
tatatattggcgcagctatcatctgacagtgcagatgatgatagactcccttaccagggt
tacattcacagggttgaggcagatgaaatatatctgagatttgacaggagctttcaccac
aagcacggggaggatgatgtttacaatgtcagcttcacatacaatagagtgaacatgaga
aggctgtaccaagcagttcatgctgctgaaaatttagggatagaccttctctttccttca
gagtcacatcgcagaagggtcatcaaaggatcctctttcaaaccattcaatccatatata
aatagggagcaagcccgtgcagttgaaatgatacttggctgcagaggatctcatccttac
atcatatatggaccaccagggactggtaagacgatgacacttgtggaagccatattgcag
ctctacacaaccaggacaaatgcacggattcttgtatgtgcttcatcaaacagtgcggcc
gaccatgttctggagaaactgcttgataaagatggacttggggttcaggaaagtgaagtg
tttaggctaaacgcaaccagccgtgcatatgaggatgttaagcctgattttattcgtttt
tgcttctttgatcatatggtcttcaaatgccctcctctgaaggccttgctgcggtacaag
atcataatctcaacctacatgagtgtgtcactattatatgctgaaggcattcataaaggt
catttctcccatattttattggatgaggcgggtcaagcctctgaacctgaaaccatgatc
ccgatatcaaacttgtgtgcaagagacactgtgattgtgctggcaggagaccctatgcaa
ttaggacctgttatttattcaagaaaagcagagaattatggtttaggaaaatcctactta
gacagactttttgagtgtgattactatggaagcagtgatgagaactatgttacaaagctg
gtgaggaactaccgctgtcaccctgcaatcttggatctgccgtcaaagcttttctacaag
ggtgaattgattgcttgtaaagaagacactgtatcatctatttatgaatatgcagacctt
cccaataaggcatttcctgttctttttgttggaattcaaggttgtgatgagagggaaggc
aataatccatcgtggtttaacagaattgaagccagcaaagtggtagagatcatcaggaaa
ttaaggaggaatactgatgtaaatgaggatgatattggagttatcactccataccgtcaa
caagttctcaaattaaagaaagcccttgagtcacttgagctgccggaactgaaagttggc
agtgttgagcaatttcagggtcaagagagggaaattataataatatctactgtcagatca
acggtgaagcataatgactttgaccgagcacacaacttgggattccttagcaaccctaga
aggtttaatgttgctattacccgtgctaaatccttgctaatcattgtgggaaatccacac
atcatctgtaaggatcaccattggaataagcttctcaggcactgtgcagataatggttct
aacataggatgtcctcttccttcacctgaaagggatgaccatactaatgatgagtctacc
gaatacaattacgaacaaaatgttcaacatgaagatggtcggagtgatatgcccagtgag
taccagaacaatgttgagtggaatgacagtggcttaaaaacaagcacagatgtggttaaa
tggggtgatatcgtcatagaggcgaccgggtgggaagatgatgatgcttcggaaccctac
tctaaaagtgaaagcaaccaaaatgtgcactcaagcaactttggtcggggtgatgagcct
gaagaaaacagtaattcattagcctcaggaagtcatggatggagtgacgaggcgtacaaa
cctcgacttgcagagaaagaaaacgaatggtctgatgggtggaactaa
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