Musa acuminata (wild Malaysian banana): 103978927
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Entry
103978927 CDS
T03447
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
mus
Musa acuminata (wild Malaysian banana)
Pathway
mus03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mus00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103978927
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mus03041
]
103978927
03009 Ribosome biogenesis [BR:
mus03009
]
103978927
Enzymes [BR:
mus01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103978927
Spliceosome [BR:
mus03041
]
Complex A
U2 snRNP components
U2 related factors
103978927
Complex B
103978927
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
103978927
Ribosome biogenesis [BR:
mus03009
]
Eukaryotic type
90S particles
Helicases
103978927
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
AAA_19
AAA_22
Helicase_C
AAA_30
DEAD
AAA_16
nSTAND3
AAA_11
UvrD-helicase
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
103978927
NCBI-ProteinID:
XP_009393166
LinkDB
All DBs
Position
3:24901425..24906332
Genome browser
AA seq
711 aa
AA seq
DB search
MEPFLRRHSVEVLLGPVGVFSYCFCLWLRIVLLARDRPSEFWIVEVAMEEKEKGEAVAAN
PVTGSPFSRRYHKLLERRKKLPVWGQRNKFLDALAKRRVVVVAAPPGSGKSTQIPQFVIE
AGYASEGKQIACTQPRCLVATALSRRVAQEMDVKLGEEVGYSVLFEDCTGPKTILKYLTD
GLLLREAMSDQFLERYTVIILDEVHLRTLATDILLAYFKNMFKTKARCDLKLVVMSTQFE
AKKFRDYFKDAQIVQPLPALHPVQIAYVKEPVRDLVEAAVEKVIHILVSESAGDIIVFLT
GLEEIERCCWRLGKLILDLGDKIGPVKVVPFHSVMPVDMQNKVFKAAPPPTRKGGPLGRR
VIVSTEITESSLSIDGIVYTIDCGYTKQKVYNADLQVESLLVLPISRASAQRRSGCARRS
APGKCFRLYSQDFFNRVQPQDSPEILRANLAGTVLQFRKLGFDNLLHLDLMDPPPVETVM
QAVETLKCLGALDDEGSLTHLGEVMSEFPLDPQMSKTIVNSPKFCCSNEILSIAAMLSVP
NCFLRPMENLEAADEAKATFNHIHGDHLSLLNVYHAYKLSNGDSTWWCKRNFINQTVLRS
ADNVRGHLVSIMHKLDLTLCSTDSSSSDDYDNVRKGLLVGYFMQVAHLDHSGNYSTAKGH
HVVDVHPSSSLASRPALVIYNDFVLASRNFIRILTDVPLDWLVEIAPFAAA
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atggagccgttccttcgtcggcactccgtcgaggtccttttgggacccgtcggggtattc
tcgtattgcttctgcctctggcttcgcatcgtcctcctcgcacgcgatcgaccgtcggag
ttctggatcgtggaggtggcgatggaggagaaggagaagggggaagcggtcgcggcgaat
cccgtgacgggatcgccgttctcgcggcggtaccacaagctgctcgagcggcggaagaag
cttcccgtgtggggtcagcggaacaagttcctcgacgccctcgcgaagcgtcgggtcgtc
gtcgtcgcggcgccacccgggtccggcaagtccacccagattcctcaattcgtcattgag
gcaggttacgcaagtgaagggaagcagattgcttgcacgcaacctcgttgtttggtagcg
acggcactgtcccgcagagttgctcaagagatggatgtgaagttgggggaggaagtgggt
tactctgtgctttttgaagactgcactggcccgaagaccattttgaagtacttgacagat
ggtctgcttctaagggaggcaatgtctgatcagttcctagaaaggtacacggtgataatt
cttgatgaggttcacttgaggactctagcaactgatattcttcttgcttacttcaaaaac
atgttcaaaacgaaagctcgttgtgaccttaaacttgtagtcatgagtactcaatttgag
gcgaagaagtttcgagattatttcaaggatgcacagattgtgcaaccactgcccgcactt
catcctgtacaaatcgcttatgtaaaggaaccggtgagggacctcgtggaggcagcagta
gagaaggttatccatatacttgtatctgaatcagctggtgacataattgtgtttcttact
gggttggaggagatagagagatgctgttggagacttggaaaactgattttggacttggga
gataaaattggacctgtcaaagttgttcctttccactccgtaatgccagtagatatgcag
aataaggtgttcaaggccgctccacctccaacaagaaagggtggccctcttggacggaga
gttattgtatcaactgaaatcacggaatcatcattatcaattgatggcattgtttacact
attgattgtgggtacaccaaacaaaaggtttacaatgcagatctccaagttgagtcattg
ctggttttgccgatatcaagagcgagtgcacaacggaggtcaggatgtgcaagaaggtca
gccccgggaaaatgctttagactttattcccaagatttctttaacagagttcagccacaa
gattcccctgagattctccgagcaaaccttgcaggcactgttcttcagtttagaaaactt
gggttcgataatttgcttcatcttgatttgatggatcctcctcctgtcgaaacagtcatg
caggctgttgagaccttgaaatgcttaggtgctttggatgatgaggggagtctgacccat
ttgggagaggtcatgagcgagtttcctctggatcctcagatgtcgaagaccatagttaat
agcccgaaattttgctgctcgaatgagatcctttcaattgctgctatgttgtcagtacca
aattgtttcttacggcctatggaaaacctggaagctgctgatgaagctaaggccactttc
aaccacatccatggtgatcaccttagtcttctgaatgtttaccatgcatacaagctaagc
aatggagattcgacttggtggtgcaaaaggaactttataaatcagactgtgctcagatct
gctgacaatgttaggggacatcttgtctcgatcatgcataagcttgatcttactctgtgc
tccactgattctagcagctccgatgactacgacaatgttaggaagggcctgctggtagga
tattttatgcaggttgcacatcttgaccattcaggcaactactcgacagcaaaaggtcac
catgtagttgacgtccatccttcaagtagtctggcatcaagaccagcacttgttatttat
aatgactttgtcttggctagcagaaatttcattcgcattctcacggatgtgcctctggat
tggttggtcgaaattgctccttttgctgcagcttaa
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