Musa acuminata (dessert banana): 103979069
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Entry
103979069 CDS
T03447
Name
(RefSeq) polyadenylation and cleavage factor homolog 4 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
mus
Musa acuminata (dessert banana)
Pathway
mus03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mus00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
103979069
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mus03021
]
103979069
03019 Messenger RNA biogenesis [BR:
mus03019
]
103979069
Transcription machinery [BR:
mus03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
103979069
Messenger RNA biogenesis [BR:
mus03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
103979069
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
zf_UBZ
Pcf11_C
Motif
Other DBs
NCBI-GeneID:
103979069
NCBI-ProteinID:
XP_009393367
UniProt:
A0A804IFL0
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All DBs
Position
BXJ2-3:38123660..38131420
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AA seq
1118 aa
AA seq
DB search
MEMENSRRSAMDRSREPGLKRPRLAAANAADRGRVASNRDRTLPPLRTGGQTLAPRAGER
QERDDVLRRGSHQELVAQYKTALAELTFNSKPIITNLTIIAGESLHAAKEIAALICANVL
EAPSGQKLPSLYLLDSIVKNIGKDYIKYFAARLPEVFCKAFKQVESSIHPSMKHLFGTWK
GVFPLAPLQIIEKELGFPPVINGSSGSASSKLDSQPQRPAHSIHVNPKYLEARQRLQQSP
RNMQQPQKELVNNVICEKKGLKDVRDHVYASDISRESDPGIGRVSERLKDRDEHDKTYYG
AGMAATEAQLNRRKGFDVNHSNGSNQVSGSANASAQLTSVDLVDTDRSKLEASRSWKISE
EEEYLWDEMKTRKTDYGGTNYLQKVGWNNNKADKTASLGRGKWIPLESGHVESNVNKVDA
FSQLVKTAKGEGRVLAYESLGDYLPPLHAKQDTDLGFSMEASSNSLLQQRASSENHSSSF
WPPHEASQSVVGSNYKGSNVGQLKEQSISFSGGSSTSTSSSLPLPGLRSSVLSTNLSSYV
HIPGSSGTSGQQRPQPLRPPSLSSQLPPSSVHIQQGKPHDSIDHNHFQSHSFAQVDQKAL
HLEGQQNQVQHLPGSPSNFLAKNHAQPSLSSSITSLSDVSQQLDGLINAANRLSSRDHLP
FTQQSQHNLSKWQTENQSQPSKPQPPLQSVTQSQTEKPPLLPLAIGAHWSGKDSGMSYSN
NAAVDVSTPPTTSSLLAAIMNGGLFPKNSVSGFQKASIQPPLPIGPPPVQALTSTAPSDT
PSLLAPISLGNIPDANSTTHFGDVMPPLPLGPPPSSSLVGVNSENSKTSDPNVNSLSSLL
SSLVAKGLIASSSTELPTVSAAQSSNEVPDQSSVFASKSLEQIPPILTTSSTPPTLAEEP
AASKSVESGMLSLSNAAEPKDIGIEFKSEILRGFHPSIIRSLLEDLVHQCHICGLRLRLQ
EQLQCHLDWHVSQKSVISNFNPKSRNWFSNRTNWLDGSMRPESRHLEAAIFLEEVVPIKE
KSEPMVPADESQSICVLCGEPFEDIYSEATDEWMYKGTVYLNLPSKQDDANNMDGTAGKS
LIVHARCTIQRSADDTDIAEHDKVDQPCAPRQPNLNSG
NT seq
3357 nt
NT seq
+upstream
nt +downstream
nt
atggagatggagaactcccgcagatccgccatggaccgctcccgagaaccgggcttgaag
cggcctcggctggcggcagcgaacgccgcggaccggggccgcgtcgcctccaaccgggac
cggacgcttcctccgctgaggaccggggggcagacgttggctcctagggcaggggagagg
caagagagagacgacgtcttgagaagagggtcgcatcaggaacttgtggcgcagtacaag
acggcgctcgccgagctaacattcaattccaagcccatcatcactaatctgaccattatc
gcgggagagagccttcacgccgctaaggaaattgccgctcttatctgcgccaatgtcctt
gaggcacccagtggacagaagttgccatcgttgtatctgctagatagtatcgtgaagaat
atcgggaaagattatattaaatattttgctgcaaggctacctgaggtcttctgtaaggcc
ttcaaacaggttgaatcttctattcatcctagtatgaaacatctgtttgggacatggaaa
ggagtttttccattggcccctcttcagataattgaaaaagagctaggcttcccaccggtc
atcaatggttcatctggatcagcatcatcaaaacttgattcccaaccacaacgtccagct
cacagcattcatgtgaatccaaaatacttggaggcgaggcagcgccttcaacaatcacct
aggaatatgcaacagccacagaaggaattagtaaacaatgttatatgtgagaaaaaagga
cttaaagatgttagagatcatgtatatgcttccgatatttcacgagagtcagaccctggc
ataggaagagtcagtgaaaggcttaaggaccgagatgagcatgacaaaacatattatggt
gctggtatggctgctactgaagcacagcttaatagaaggaaaggattcgatgttaatcat
tctaatggaagcaatcaagtatctggatctgcaaatgctagtgctcagctaacttcagtt
gacttggttgatacagatagaagcaaattagaagcatctaggagctggaagatctctgag
gaggaagagtatctgtgggatgaaatgaaaacaagaaaaacagattatggaggtaccaac
tacttgcaaaaagttgggtggaataataataaagctgataagactgccagccttggaaga
ggtaaatggatccctctggagtctgggcatgtagagtccaatgtgaacaaagttgatgcc
ttctctcaattagtgaagactgctaaaggagaaggcagagtgctggcatatgagagcctt
ggtgattatcttccaccacttcatgccaagcaggacactgatttgggattcagtatggag
gcctcttcgaattcactattgcagcaaagggcttcatctgaaaatcattcctcatccttc
tggcccccccatgaggcgtcacaatcagtggttggatcaaattataaaggctcaaatgtt
ggtcaactgaaagaacaatccatttctttcagtggtggttcatctacaagcactagttct
tctttgcctcttccagggctgagatcctccgtcctttctacgaatttgagctcttatgtt
catatcccaggttcaagtggaacttctggacagcaaaggccacaacctttacgacctcca
tcactgtcttctcagttacctccatcttcagtgcacattcaacaagggaagccacatgac
tcaattgatcataatcattttcaatctcattcattcgctcaagtggatcagaaggctttg
catctggaggggcaacaaaatcaagtgcaacatctaccagggtctccaagtaattttctt
gctaaaaatcatgctcagccaagtttatcaagctcaataacatccctctcagatgtttct
caacaacttgatggtttaattaatgctgctaatcggttgagttcaagggatcatcttcct
ttcacacagcaatcacaacataatctatccaaatggcagacagaaaatcagtctcagcct
tccaagcctcaaccgccccttcagagtgtaacccagtctcagaccgagaagccaccactt
ctgcctctggcaattggagctcattggagtggaaaagactctgggatgagctactcaaat
aatgctgctgttgatgtttcaacaccgcctaccacgagtagtttgctggctgctattatg
aatggtggtttattcccaaagaattcagtcagtggcttccaaaaagcaagtatacagcct
cctttacctattgggcctcctcctgttcaagctttgacatcaactgctccttcagatact
ccatcattgttagctcctatttcccttggtaatataccagatgcaaattcaaccacccat
tttggagatgtgatgcctcccctgccacttgggcctccaccttcgtcatccttggttggt
gtgaactccgagaactccaagacatctgatcccaacgtgaactcactttcaagtcttttg
agttccttggttgcaaaaggtttaatagcctcatcgtcaaccgagttgccaactgtatct
gcagctcagtcatctaatgaggtcccagatcagtccagtgtctttgctagcaaaagtttg
gagcaaattcctccgatcttaactacctcaagcactcctccaactttggcagaagagcct
gctgcttcaaaatcagttgaaagtggcatgctatcgctatccaatgcagctgaaccaaag
gatataggcattgagttcaaatcagaaattttacgtggatttcatccttcaatcatcaga
agtctgctagaggatctagtgcatcagtgccacatatgcggtctaagacttagactacaa
gagcagcttcaatgtcatttagattggcatgtctcacagaagtctgtgataagtaatttt
aacccgaagtctagaaattggttttcaaataggacaaattggctcgatggtagcatgaga
ccagaatctcgtcatttagaggcagcaatttttttggaggaagttgtcccaattaaagag
aaatctgaaccaatggttcctgcagatgagagccaaagtatatgtgtactgtgtggagaa
ccatttgaggatatatactctgaagcaacagatgaatggatgtacaaagggactgtatat
ttgaatctaccaagcaagcaagatgatgcaaacaatatggatggcactgctggtaagtct
cttattgtacatgcacggtgcacaatacaaaggtctgctgatgatacagatatcgcggag
catgataaagtggaccaaccatgtgcaccaaggcaacctaatttgaattcagggtga
DBGET
integrated database retrieval system
