Musa acuminata (dessert banana): 103979246
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Entry
103979246 CDS
T03447
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
mus
Musa acuminata (dessert banana)
Pathway
mus03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mus00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103979246
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mus03019
]
103979246
03012 Translation factors [BR:
mus03012
]
103979246
Enzymes [BR:
mus01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103979246
Messenger RNA biogenesis [BR:
mus03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
103979246
Translation factors [BR:
mus03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
103979246
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
AAA_19
nSTAND3
T2SSE
AAA_16
ATPase
AAA_30
PhoH
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
103979246
NCBI-ProteinID:
XP_009393597
UniProt:
A0A804IEU7
LinkDB
All DBs
Position
BXJ2-3:36406961..36421695
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AA seq
1215 aa
AA seq
DB search
MLSAVVLRGCRRLTMPVARSPHLRSVYPRSTCPNPRGSLNFLNPRLLPMKTGGGAGVYVP
PIPRLRSMIASANGTLTTARSVDYDWRDGGGQGIAVSPPPPATTSSGGDGYPSYFHQQSS
HYARYAYDDYSDDESDRDVEALPGSNKGASSLDNVDEWKWKLSMLLRSETEQEIVSRERK
DRRDYEHLAALAERMGLCSRQYAKVVVFSKVPLPNYRPDLDDRRPQREVSIPVGLQREVD
DILGEYIARKRTNRESFPSIGFSRSSSTDSFATDEGFFEQQDLQTSTSVVMEKILRRRSL
QLRNQQQTWQDSPEGQNMLEFRRSLPAFKEREALLAAISQNQVVVVSGETGCGKTTQLPQ
YILESEIDAARGATCSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKGRET
RLLFCTTGILLRRLLVDRNLKGVTHVIVDEIHERGMNEDFLLIVLKDLLPRRPELRLILM
SATLNAELFSSYFGGAPMIHIPGFTYPVHTHFLENVLEITGHRLTPYNQIDDYGQEKMWK
MQKQAMRRRKSQIASVVEDALEAADFREYCSRTRESLSCWNPDSIGFNLIESILCHICRK
ERPGAVLVFMTGWDDINSLKDQLQANPLLGDPTKVLLLPCHGSMASSEQRLIFDKPENGI
RKIVLATNMAETSITINDVVFVVDCGKAKETSYDALNNTPCLLPTWISKASTRQRRGRAG
RVQPGECYHLYPRCVYDAFADYQLPELLRTPLQSLCLQIKSLRLGSISEFLSRALQSPEP
LSVQNAIEYLKVIGALDDKEELTVLGRHLSMLPVEPKLGKMLIYGAIFNCLDPILTVVAG
LTVRDPFLTPFDKKDLAESAKSQFSCRDYSDHLALVRAFDGWKDSEREHSGYEYCWKNFL
SAQTLKAIDSLRKQFLFLLKDTGLVTDSFSTCNKWSQDENLTRAVICAGLYPGVCSVVNK
EKSISLKTMEDGQVMLSSNSVNGKESKILYPWLVFNEKVKVNSVFLRDTTAVSDSVLLLF
GGNICRGGLDGHLKMLGGYLEFFMNPDLQSTYLNLKRELEELIYFKLVNPRMDIPSSEDL
LSATRLLVAEDPCSGRFVFGRQELKPKKEKSLLAGSTGGGDNSKNQLQTLLTRAGHQNPK
YKTKQLKNNQFRAMVEFNGMQFLGQPCSNKKLAEKDAAAEALEWLQGGTSSGSRDPDPMS
MMVKKKSKKQHHRRT
NT seq
3648 nt
NT seq
+upstream
nt +downstream
nt
atgctctccgccgtcgtcctccggggctgccgccgcctcactatgcctgtagcacgctct
ccccacctccgctccgtctatcctagaagcacttgtcctaatcccagaggtagcttgaat
tttcttaatcctcgcctcctgccgatgaagactggcggcggcgccggtgtgtacgtcccg
ccgatcccgcggctccggtccatgatcgcctcagcgaacggcaccctaaccacagcccgg
tcggtggactatgactggcgggatggaggcggacaggggatcgcggtcagcccgccgccg
cctgcgacgacttcttctggaggcgatgggtatccatcttacttccaccagcaaagctcg
cattatgcgaggtacgcttatgatgattactccgatgatgagtctgatcgggacgtggag
gcgctgccggggtctaacaagggcgcatcaagtttggataatgttgatgaatggaagtgg
aaactaagcatgcttcttcgaagtgaaactgagcaagaaatagtatcaagggagagaaag
gacaggcgtgattatgagcatcttgctgcattggctgagagaatgggattgtgtagtcgg
caatatgcgaaggtcgttgtctttagtaaggtgcctttgccaaactacagaccagatctt
gatgatagaaggccccaaagagaggtctcaattcctgttggtctgcaaagagaagttgat
gatatacttggggaatatattgctcgaaagcgaacaaatcgagaaagctttccaagtatt
ggattttcaaggtcaagtagcactgacagttttgccaccgatgaagggttttttgaacaa
caagatttacagacatccacaagtgttgtaatggagaaaattctcagacgaaggagcttg
cagctacgtaatcaacaacagacttggcaggattctccagaaggtcagaatatgcttgag
tttcgtagaagtcttcctgctttcaaggaaagggaagctctgttagcagccatatctcaa
aaccaggtggtggttgtttcaggtgaaacaggatgtggtaagacaacacaactacctcaa
tacattttagaatctgagatagatgctgcacgtggagcaacctgtagtattatatgtact
cagccaaggagaatatctgcgatggctgtttctgaaagggtcgctgctgaaaggggggag
aaattgggtgaatctgttggatataaggttcgtctagaaggtatgaaaggaagggagact
cgcctacttttttgtacaacaggaattttgttaaggagattgctagttgacagaaacttg
aaaggtgttacccatgttattgttgatgaaattcatgaacgcggcatgaatgaagatttt
cttctgattgtccttaaagaccttcttccccgtcgtccggaacttagattaattttgatg
agtgcaactttaaatgctgaattgttctcttcgtacttcggtggggctccaatgatacac
atccctggttttacgtatccagttcacacacattttctggagaatgttctggaaattact
ggacataggttgactccatacaatcaaattgatgattatggccaagagaagatgtggaaa
atgcagaaacaagctatgagaaggaggaagagtcaaattgcttctgttgttgaagatgct
ctagaagctgctgattttagggagtattgttcacgaactcgtgaatcactatcttgttgg
aaccctgattcaattggctttaaccttatagaaagtattctgtgccacatttgtcggaaa
gaaaggcccggtgcagttttggtgtttatgactgggtgggatgacattaattctcttaaa
gatcagctgcaagctaatcctcttcttggagatcctacaaaagtattgcttcttccatgt
catggatcgatggcgagctcggagcagaggttaatatttgataagcccgaaaatggtata
agaaagatagttcttgctactaatatggctgagacaagtattacaattaatgatgtggtt
tttgttgttgactgcgggaaggcaaaggagacttcatatgatgctttaaataacactcct
tgtttgcttccaacatggatctctaaggcatccactcgacaaaggagagggagagctggt
cgtgtgcagcctggggagtgctatcacctttacccaagatgcgtgtatgatgcatttgct
gactaccaattacctgaacttttaagaacaccattacaatccctttgtttgcaaataaaa
agtctacgcctaggaagcatatctgagttcttatccagggctttgcaatcaccggaacct
ctgtcggtacaaaatgccattgagtatctaaaagtaattggggcactggatgacaaggaa
gaattaactgttttaggacgccacttgtcaatgctaccagtggaacccaaattgggaaag
atgcttatatatggggctatattcaactgtcttgatcctatactgactgttgttgctggt
ctaaccgtccgagatccatttttgactccgtttgacaagaaagatttggcagaatctgcc
aaatctcagttttcttgccgtgattatagtgatcatctagcactagttcgagctttcgat
ggatggaaggattcagaaagagagcattctggatatgagtattgctggaagaactttctt
tctgctcagacattgaaggccattgattctcttcggaagcaatttctttttcttctgaag
gatacaggtcttgttaccgacagttttagtacatgcaacaagtggagtcaagatgaaaac
cttaccagggctgtgatatgtgctggattgtatcctggagtttgttctgttgttaacaag
gagaaatcaatttctttgaagacgatggaggatggacaggtcatgctttcctcgaattca
gtcaatggcaaggagtctaagattctatatccttggttagtttttaatgaaaaggttaag
gtgaattcagtattccttcgtgacacaactgctgtgtctgattctgtactgctgctcttt
ggagggaacatctgccgaggggggcttgatggtcacttgaaaatgttgggtgggtacctg
gagttcttcatgaatcctgatttgcaatcgacttatctaaatcttaagagagagcttgaa
gaacttatttacttcaaacttgtcaatcctagaatggacattccgagcagtgaggatctc
ctgtcggcaacaaggttgctggtggcagaggatccatgcagtggccgatttgtctttggc
cgtcaggagctaaagcccaagaaggagaagtctttgcttgcaggtagcacaggtggtggt
gacaactccaagaaccaattgcagacgttgctcaccagagctgggcaccaaaacccgaag
tacaagacgaaacaacttaagaacaaccaattcagagccatggtcgagttcaacggtatg
cagttccttggccagccatgtagtaacaagaagcttgcagagaaggatgctgcagccgag
gcactcgagtggcttcagggtgggacctcatccggttctcgggacccagatcctatgtcc
atgatggttaaaaaaaagagcaagaagcagcatcacagaagaacttaa
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