Musa acuminata (dessert banana): 103981427
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Entry
103981427 CDS
T03447
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit B
KO
K07466
replication factor A1
Organism
mus
Musa acuminata (dessert banana)
Pathway
mus03030
DNA replication
mus03420
Nucleotide excision repair
mus03430
Mismatch repair
mus03440
Homologous recombination
mus03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
mus00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
103981427
03420 Nucleotide excision repair
103981427
03430 Mismatch repair
103981427
03440 Homologous recombination
103981427
03460 Fanconi anemia pathway
103981427
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mus03000
]
103981427
03032 DNA replication proteins [BR:
mus03032
]
103981427
03400 DNA repair and recombination proteins [BR:
mus03400
]
103981427
Transcription factors [BR:
mus03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
103981427
DNA replication proteins [BR:
mus03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
103981427
DNA repair and recombination proteins [BR:
mus03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
103981427
MMR (mismatch excision repair)
103981427
DSBR (double strand breaks repair)
HR (homologous recombination)
103981427
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
Rep-A_N
REPA_OB_2
tRNA_anti-codon
DUF223
Motif
Other DBs
NCBI-GeneID:
103981427
NCBI-ProteinID:
XP_009396434
UniProt:
A0A804IPN9
LinkDB
All DBs
Position
BXJ2-4:10937221..10940653
Genome browser
AA seq
633 aa
AA seq
DB search
MASDQVEMRKSVTPGAISMLLSNSSPDSPSDIPEIIVQVVDLKPIGSSSTRFTFMASDGK
MKLKAMLPTHFSSEINSGKLQNLGLIRILDYTCNSIPNQPEKALIVTKCEIVCPSLDMEI
KSDVKKEETGIILKPKQEALIKSDAKKEELGMSLKPKQEMVTKSAVQIVREQHGNAAPAA
RLAMTRRVHPLASLNPYQGNWTIKVRLTNKGNLRSYRNARGEGHVFNVELTDEDGTQIQA
TMFNEAATKFYPKFELGKVYYISKGSLRVANKQFKTVQNDYEMTLNENSIVEEVEGEAFV
PETKYNFVRIDRLGAYVNGRELVDLIGIVQNVSSTLSIRRKSNNDTIPKRDITIADDSNK
TVNVSLWNDLATDVGQQLLDMVDTSPVVAIKCLKVGDFQGVSLSTLSRSTVVINPDLPET
KKLRSWYDSEGKGTSMASIGSNLISPNSKTGSRSMYSDRVFLSQITDDPTLGQDKPAFFS
INVYVSFIKPDQTMWYRACKTCNKKVTEAVGSGYWCESCQKNDDQCSLRYIMVVKVSDPS
GEAWLSVFNEPAEKIMGCSADELDRVKTEEGDEKYQLKLKEATWVPHLFRVSVAYTEFMN
DRRQRITVRAEAPVDCAAESSYLLEEIHKLSVS
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcggatcaagtggaaatgaggaagtcggtgacgccaggagcgatctcgatgctc
ctctccaactcgtctcctgattcgccctccgacatcccggagatcatcgtacaggtcgtc
gatctcaagcccatcggcagcagcagcacccgcttcacatttatggctagtgatgggaag
atgaagctgaaagccatgcttccaactcatttttcttcagaaatcaattccggcaaactc
cagaaccttggcctcatccgcattcttgattacacttgcaactccattccaaatcaacct
gaaaaggctttgattgtgacaaaatgtgaaatagtctgcccctcacttgatatggagatt
aaaagtgatgtgaagaaggaagagacgggaataatcctgaaacctaagcaagaggcactg
atcaaaagtgatgcgaagaaagaggaacttggaatgagtttgaagcccaagcaagagatg
gtgactaagtctgctgttcaaattgttcgtgagcagcatgggaatgctgctcctgctgca
cgactggcaatgacaagaagagtgcatcctcttgcctctttaaatccgtatcagggaaat
tggaccataaaggttcgactcacaaacaaaggcaatttgaggtcatataggaatgccaga
ggagaaggccatgtcttcaatgtggagttgacggatgaagatggtacccaaattcaagct
accatgtttaatgaagcggcaacaaaattttatcctaaatttgagttaggcaaagtctac
tatatctcaaaaggttctctcagggttgcaaacaagcagtttaagaccgtgcaaaatgat
tacgagatgaccctgaatgagaactccatagttgaagaggtcgaaggggaggcgttcgtc
cccgaaaccaagtacaactttgtcaggatcgataggttgggagcttatgttaatggcagg
gagcttgtagacttgattggcattgttcagaatgtttcatcgactttaagcatccggagg
aaaagcaacaatgacaccattcccaagcgcgatatcacgattgctgatgattcgaataaa
actgttaatgtctctctttggaatgatctcgcaactgatgttggtcagcagttgctagac
atggttgatacctctccggttgtagctataaaatgccttaaagtaggagatttccaaggc
gtgtctttatcaactttaagcagaagcacagtggtgatcaatccagacttacctgaaaca
aagaagctgagatcctggtatgattcagaagggaaaggcacttcaatggcatccattggt
tcaaacttgatctcccctaactcgaagactggatcgaggtccatgtattctgatagggtc
ttcctttctcaaataacagacgatccaactctgggtcaagataagcctgccttcttcagc
ataaacgtctacgtaagtttcatcaagcctgatcagacaatgtggtaccgagcatgcaag
acatgcaacaagaaggttaccgaagctgttggctctgggtactggtgtgaatcgtgccag
aagaacgatgatcagtgctccttaagatatataatggtggtaaaggtctcggatccttca
ggtgaagcctggctttcggttttcaatgagccggcagagaaaatcatgggatgctctgct
gatgagcttgacagggtaaaaacagaggaaggtgacgagaaataccaactcaaactgaaa
gaagcaacatgggttccgcacctgttccgggtcagcgttgcatacaccgagttcatgaat
gacaggaggcagaggataacggtcagggctgaggctcctgtggactgcgcagctgagtcg
agctaccttttggaagagatccacaagttgtccgtctcttaa
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