Musa acuminata (dessert banana): 103982451
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Entry
103982451 CDS
T03447
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
mus
Musa acuminata (dessert banana)
Pathway
mus03013
Nucleocytoplasmic transport
mus03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mus00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
103982451
03015 mRNA surveillance pathway
103982451
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mus03019
]
103982451
Enzymes [BR:
mus01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
103982451
5.6.2.5 RNA 5'-3' helicase
103982451
Messenger RNA biogenesis [BR:
mus03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
103982451
mRNA cycle factors
Common to processing body (P body) and stress granule
103982451
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
UvrD-helicase
NAT10_TcmA_helicase
nSTAND3
NPHP3_N
PhoH
SRP54
ATPase
AAA_22
AAA_16
Hydin_ADK
TraI_hel_assoc_N
Ribosomal_S13_N
AAA_32
Motif
Other DBs
NCBI-GeneID:
103982451
NCBI-ProteinID:
XP_009397656
UniProt:
A0A804IXH4
LinkDB
All DBs
Position
BXJ2-4:complement(44773782..44791194)
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AA seq
1268 aa
AA seq
DB search
MAAQSVNNLYETASQPDTSGDAYTFLEFNTQDEFDDYPAFRELSQPSRSTAWPPHLPPET
APDSPSADLQNPDAVSSPSATAPAAGPSSSLKARGVAGGSQAADTVDALEAGMSGLNFDE
TGDENYEFGKGNFTEHACRYCGVQNPACVVRCNIPTCRKWFCNSRGNTSGSHIVNHLVRA
KHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDMN
WDLSQWCPLIDDRCFLPWLVKVPSEQEQLRARQISAQQINKLEELWKTNPDASLEDLEKP
GVDDEPQPVSLKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVSIRWDIGLNKKRIA
YFVFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTSQEEVALELRSGQGVPVD
VNHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEQQVVRNTLPRRFG
APGLPELNASQVFAVKSVLQKPISLIQGPPGTGKTHTSAAIVYHMAKQGQGQVLVCAPSN
VAVDQLADKISSTGLKVVRLCAKSREAVMSPVEHLTLHYQVRHLDTSEKSELHKLQQLKD
EQGELSSSDEKKFKALKRATEREILQSADVICCTCVGAGDPRLENFRFRQVLIDESTQAT
EPECLIPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGNKPFRLQVQY
RMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGT
SYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIE
VASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQ
PLWNSLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNGRLFYGGGPGIVHTDNSGPVS
SSVPLGDKRGGRSRGHSYVPFGPPNGTHKSGTHPAGYPLPRAPLPPFPGGPHSQPYAIPT
RAVHGPIGAVPQVPQPGNRGFGPGRGNAGGPIGGHLAHQQSSQQPFGGIGSVFNFPHLDN
PNSQPSVGAPSSQTGLMTQMPVQGLSQTFRDGLSIGGMSQDFPGDDFKSQGSHVAYNVAD
FSMQASQSGYSVDYVTQGPQAAFPGSYLNQNTQPGYSQLGAGNEFMFQDYVPHGSQGLFT
QAGFNGPSQDESSQSHFSMAGTGSLQSQGPLNPLYSQPFAHYNAQPQNMQPPQQQNQSSP
SQKHHFNG
NT seq
3807 nt
NT seq
+upstream
nt +downstream
nt
atggcggcccagtcggtgaacaacctctacgagacggcgtcgcaaccggacaccagcggt
gacgcttacaccttcctcgagttcaacacccaggacgagttcgacgactacccggcgttc
cgggagctctcccagccgtcccgatccactgcctggcctcctcatcttccccccgagact
gcgcctgactccccctccgccgatctgcagaaccccgacgccgtttcctctccctccgcc
acggcgcccgccgcgggcccatcgtcatccttgaaggccaggggcgtcgccggcggcagc
caggcggctgacacggttgatgccctcgaagccgggatgagcgggctcaacttcgacgag
actggggatgagaattacgagttcggaaaggggaatttcacagagcacgcctgccgatat
tgcggggtgcagaatccagcgtgcgttgtgaggtgtaacattccaacgtgtaggaagtgg
ttctgtaactcgaggggtaacacctcagggtcccatatcgtcaatcatctggttcgagca
aagcacaaggaagtttgtcttcacaaggacagtccattaggagagacaattcttgaatgc
tacaattgtggatgccggaacgtttttctcctgggatttatatctgctaaaacagaaagc
gttgttgttctcttgtgcagagaaccatgtctgagcgtcaatgcactgaaggatatgaat
tgggatctcagtcaatggtgtccccttattgatgataggtgtttcctaccatggcttgtt
aaggtcccttcagaacaggaacaattgagagcacgccaaattagtgctcagcaaattaac
aaactggaagagctttggaagacaaaccctgatgcttctctggaagatcttgagaagcca
ggagtggatgatgaaccacaacctgtttcattgaagtatgaagatgcatatcagtaccaa
aatgtatttgcaccactgattaagcttgaagctgattatgataagatgatgaaagagtca
caaagtaaagacaatgtcagtatacgctgggatatcggccttaataaaaagcgcatagcc
tattttgtttttccgaaggaagataatgaactaaggcttgtcccgggggatgagctgcgg
ctccgatattctggtgatgcagcacatcctgcatggcagtctgttggacatgtgattaag
ctgacttcgcaagaggaggttgcacttgaacttcgttcaggccagggagtccctgttgat
gtgaatcatggttttagtgtagattttgtgtggaaaagtactagctttgatcgaatgcaa
ggagctatgaagacttttgctgtagatgaaacaagcgtcagtggatacatatatcatcac
cttttgggccatgaagttgaacaacaagtagtacgaaatactctacctcgccgctttggc
gctcctgggcttcctgaactaaatgcatcccaagtttttgctgttaagagtgtgcttcag
aaaccaataagtttgatacagggcccacctggtacaggaaaaacacacacttctgcagca
attgtatatcacatggctaaacaaggacaaggccaggttctagtatgtgccccaagtaat
gtggctgttgaccaattggctgataagataagctcaactggtttgaaggttgtcaggctt
tgtgctaaatcaagggaagctgtcatgtctcctgttgagcatctaacacttcactatcag
gttcgccaccttgatacatctgaaaagagtgaacttcataagctgcagcagttaaaagat
gagcaaggtgaattgtcaagcagtgatgaaaagaaattcaaggcactaaaacgagctact
gaaagggagatattgcagagtgctgatgttatttgttgcacatgtgttggtgctggagac
cccaggcttgaaaatttccgattccgccaggttcttattgatgagtctacgcaggcaaca
gagcccgagtgccttattccattagttttaggtgtcaaacaggttgtacttgttggagat
cattgccagctcggtcctgtcataatgtgtaaaaaggcagcccgtgctgggttagcacag
tctctctttgagcgtcttgtgcttcttggaaacaaaccatttagattgcaggtccaatac
agaatgcatccgtccctttctgaatttccttctaatagcttctatgaaggcacccttcag
aatggtgtgacaattaatgagagacaatcatctggcattgattttccttggcctgttccc
aaccgtcctatgttcttctatgtgcagatgggacaagaggaaattagtgccagtggaact
tcgtatcttaacagaactgaagctgcaaatgttgaaaaaattgtcactacttttttaaga
agtggtgttgtacctagtcagataggagttattacgccatatgagggacaaagggcttat
attgtaaattacatgtcaaggaatggtgctcttagacaacagctctacaaggaaattgag
gttgcaagtgttgactcctttcaaggcagagagaaagattacatcattttgtcttgtgtg
agaagcaatgaacatcagggtattggatttcttaatgatccacggagattgaatgttgca
ctaactcgtgctcgttatggcattgttatacttgggaatcccaaggtcctaagcaaacag
cctctttggaatagtttgttgacacactacaaggagcatgaatgtctcgtcgaaggacca
ctaaacaatttgaagcagagtatggtacagtttcaaaagccaaaaaagatttacaatggc
agacttttttatgggggtggtcctgggattgtgcacactgataactctggtcctgtcagt
tcatcagtccctctcggtgataagagaggtggacgcagtagaggtcattcttatgttcca
tttggtcctccgaatggtactcataaatctggcacacacccagcaggatatccgttgccc
cgtgctcctcttccacctttccctggaggtccccattctcagccatatgcaattccaact
cgtgccgttcatggacctatcggagctgtaccacaggtcccacagcctggcaacaggggt
tttgggcctggtcgtggtaatgctggtggtcctattgggggtcacctggctcatcagcaa
agttcccagcaaccttttggtggtattggttctgtttttaacttcccccatctggacaat
ccaaacagtcagccttctgttggagctccatcatcacaaactggattaatgacacagatg
ccagttcaaggtctcagtcaaacatttcgggatgggctttctattggcggcatgtctcaa
gactttcctggtgacgacttcaaaagccaaggatcacatgttgcttataatgttgctgat
ttctctatgcaagcttctcaaagtggttatagcgttgattatgtcactcaaggacctcag
gctgctttcccaggaagctacctaaaccagaatactcagccaggatattcccagttgggt
gctgggaatgaattcatgtttcaggattatgtgcctcatggatcacaaggtttgttcaca
caagcaggattcaatggtccttcacaagatgaatcttctcagagccatttcagcatggct
ggaactggttctcttcaatcgcagggccccctgaaccctctatactcacaaccgtttgcc
cattataatgctcagcctcaaaatatgcagcctccgcagcagcaaaatcagagttcacct
agccagaaacatcacttcaatggctga
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integrated database retrieval system
