Musa acuminata (dessert banana): 103984364
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Entry
103984364 CDS
T03447
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 52C-like isoform X1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
mus
Musa acuminata (dessert banana)
Brite
KEGG Orthology (KO) [BR:
mus00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mus03019
]
103984364
03041 Spliceosome [BR:
mus03041
]
103984364
03036 Chromosome and associated proteins [BR:
mus03036
]
103984364
Enzymes [BR:
mus01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103984364
Messenger RNA biogenesis [BR:
mus03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
103984364
mRNA cycle factors
Common to processing body (P body) and stress granule
103984364
Spliceosome [BR:
mus03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
103984364
Chromosome and associated proteins [BR:
mus03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
103984364
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
NorB_cytochrome_c-like
Motif
Other DBs
NCBI-GeneID:
103984364
NCBI-ProteinID:
XP_009400121
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All DBs
Position
BXJ2-5:complement(4450656..4456526)
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AA seq
684 aa
AA seq
DB search
MAMSLTDAAAEPTIPDPAAPATRHTYVPRFLRNSYDQFGNSFSSCRFDIPPHRAPSFLQS
SPRIPSNRRGSSDRESDGRASGHRSRRGKARRERNPFEIADEFIGLGISDNDASGGGGEG
INFDAYDDIPVEVSGLDVPPPATTFAGIDLEEALNQNIQRCRFVKPTPVQRHAIPILVAG
RDLMACAQTGSGKTAAFCFPIISGVMRNRRQFPTKGPSGGDRTTLPRALILSPTRELSCQ
ILGESKKFAYQTGVRVVVAYGGTPIGHQLRDLEKGAEILVATPGRLLDLLERAKVSLKEI
KYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGLRQTMLFSATFPQEIQRLASDFLSNYV
FLTVGRIGSSTDLISQRVEYVPDVDKRGRLVDLLHAQRVNGIHSKQLLTLVFVETKRAAD
SLERWLSKNGFPATSIHGDKTQPERERALRSFKSGATPVMVATDVASRGLDVPHVALVIN
FDLPKDIDDYVHRIGRTGRAGKTGKATAFFNEGNQRLAKSLAECMEDANQEVPDWLYNHV
ARPSYGGGRRRGSSTRRFGGRDFRKDIGGGSPAANSHRGGNVIADVNYASDGGFDHEPII
GGRNYRTGTGCGNPSVKSYEGGNIVTDGNDSCDDRLDHVAISATVGGTRSVSSYGGGNDI
TDGNNAFENDGGSNYGSIIANGWV
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atggcaatgtcgttgactgacgccgcggcggagccgaccatcccggatccggcagcacct
gcaacccgccacacctacgtccctcgctttctcaggaactcgtatgatcaatttgggaac
tccttttcttcttgtcgattcgacattcctcctcatcgtgccccctccttcctccaatcc
tccccccgcatcccttccaaccgccgcggctccagtgaccgagaatctgatggtcgagct
tctggccaccgctcccgccgtggtaaggctcgacgggagcggaacccctttgaaatcgcc
gacgagttcatcggcttggggatatcggataatgacgcttctggcggcggtggcgagggg
atcaacttcgacgcctacgacgacatacccgtcgaggtgagcgggcttgatgtgcccccg
cccgctacaacctttgcggggatcgatctggaggaggccctgaaccagaacattcagcgc
tgccgattcgtgaagcctactccggtccagcgacacgctatacccatactggtggccggg
cgcgatctgatggcctgtgcccagaccgggtcggggaagaccgctgcattttgcttcccg
atcatcagcggtgtaatgagaaaccgccggcagttcccgaccaaggggccctctggcggt
gatcgaactaccttgcctcgtgcacttatcctgtcccccaccagggagttgtcgtgccag
attcttggggaatcaaaaaagtttgcctatcaaacaggggtcagagttgtcgtggcttac
ggaggaactcccatcggtcatcagctgcgtgatcttgagaaaggtgctgagattcttgtt
gccacacctggccgtttactggatttgctagagagagcaaaggtttctcttaaggagatc
aaatatttggcattagatgaagctgacaggatgctggatatgggttttgaaccccagatc
cgcaaaatagtccagcaaatggacatgccgccaccaggcctaaggcagaccatgcttttc
agcgcaaccttcccacaggagatacagcgtttagcttcagactttttatcaaattatgtt
tttctgactgttggaaggatcggatctagcacagatttaatttcgcagagagttgaatat
gttcctgatgtggataaaagaggccgtctggtggatcttcttcatgcacagagagtaaat
ggaattcacagcaagcaattgttgacactagtttttgtggaaaccaaaagagcagctgat
tccttggagcgctggctgtctaaaaatgggtttcctgcaacatctattcatggcgataaa
actcagccagaaagagagcgtgctttgagatcctttaagagcggtgcaactcctgtcatg
gtggcaactgatgttgcgtcgcgcggactggacgtcccacatgttgctcttgtcatcaat
tttgatctgccgaaagacatagatgactatgttcaccggattggaaggacaggccgagct
ggaaagactggtaaggctactgcattctttaacgagggaaaccagcggctggcaaagtcg
cttgccgagtgcatggaggacgctaaccaagaggtcccggactggctttataaccatgtt
gctcggccatcatatggtggcgggaggagacgagggtctagtaccagaaggtttggtggc
cgtgacttcaggaaggatatcggaggaggaagccctgcggcaaactcacacagaggaggt
aatgttatagctgatgttaattatgcgtctgacggcggttttgatcatgagccaatcatt
ggtggccgcaactacaggacaggtactgggtgtggaaatccttcggttaaatcatatgaa
ggaggcaatattgtaaccgatggcaatgattcttgcgatgaccgtttagatcatgttgca
atcagtgccactgtgggaggaactcgctccgttagctcatatggaggaggtaatgatata
actgatggcaataatgcgtttgagaacgacggcggctctaattatgggtcaatcattgcc
aatggttgggtttga
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