Musa acuminata (dessert banana): 103989425
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Entry
103989425 CDS
T03447
Name
(RefSeq) carbon catabolite repressor protein 4 homolog 1
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
mus
Musa acuminata (dessert banana)
Pathway
mus03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mus00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103989425
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mus03019
]
103989425
Enzymes [BR:
mus01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
103989425
Messenger RNA biogenesis [BR:
mus03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
103989425
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
103989425
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
zf-C6H2
Motif
Other DBs
NCBI-GeneID:
103989425
NCBI-ProteinID:
XP_009406539
UniProt:
A0A804JMH4
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Position
BXJ2-6:complement(40610779..40621448)
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AA seq
605 aa
AA seq
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MLTVLRVHLPSEIPVVGCEITPYVLLRRPDGSISTDDVPESAPLNGYCMRYKWYRNQGDQ
RVAVCSVHPTEQATLQCLVCLKEKVPIAKSYHCTPRCFSDAWQHHRSLHDQAKKTVNENG
TDEEEVFGRFNSSGSGSFSTGLSGVAPNLVQSPGLNNGPIPIYPTTVAEKNGETWSEVAF
SRTYTPTADDINHVLKFECVAIDVETRIPVGNVNTVLTSRVIPAPSPTPRRMVPVSGDLL
GQLDLDGRTSSGTFSVLSYNILSDAYATSEAYSYCPTWALSWPYRRQNLLREIIGYHADI
LCLQEVQHDHFEEFFAPEFDKHGYQAFYKKKTSEVYGGNPNTVDGCATFFRRDRFSHVKK
YEVEFNKAAQSLTDVAMAAGQKKVALSRLIKDNVALIVVLEAKFSNYGTDNPGKRQLICV
ANTHVSVHHEHKDVKLWQVHTLLKGLEKIAVSADIPMLVCGDFDSVPGSAPHALLANGKV
DPLHPDLAVDPVGILRPTNKITHQLPLVSVYSSFARMAGVSPGLEQQRRRMDASTHEPLF
TNCTRDFIGTVDYIFYTADSLSVESLLELLDEENLRKNTAIPSPEWSSDHIALLAQFRCK
PRIRR
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
atgctgaccgtgctgcgggttcacctgccgtcggagatccctgtggttggctgcgagatt
acgccttatgttctcttgcgccggccggatggctccatctcgactgacgatgtccctgaa
tctgccccgctcaatggctactgcatgagatataagtggtaccgaaatcaaggtgatcaa
agagttgctgtatgcagtgtacacccaactgagcaagcaaccttacagtgccttgtttgt
cttaaggagaaagtgcctattgccaagagttaccattgtactcctaggtgcttctctgat
gcttggcagcaccatcgctcattgcatgaccaagcaaagaaaacagtaaatgaaaatgga
actgatgaggaagaggtctttggacgctttaatagtagtggatctggaagttttagcaca
gggctgtctggtgttgcacctaatttagtacagagtccaggccttaataatggtccaatt
cctatatatcctacaactgttgctgaaaaaaatggggaaacctggtctgaagtagccttt
tctaggacatatactccaacagctgatgatattaatcatgttcttaagtttgaatgtgta
gcaatagatgtggagacaagaatacctgttggaaatgtcaatactgttttgacatcacga
gtaattccagccccctctccaactcctcgccgcatggttccagtgagtggggacctcttg
gggcagttagatctagatggccgaacatcttctgggaccttctcagttctttcatacaac
attctctctgatgcatatgctacaagcgaggcttatagctattgcccaacctgggccctt
tcgtggccctaccgcaggcaaaacttgctgcgggaaattattggctaccatgctgatata
ctttgtcttcaagaggtccaacatgatcattttgaggaattctttgctccagaatttgat
aaacatggatatcaagcattttacaagaaaaaaacttcagaggtttatggtggcaatcca
aatactgtcgatggttgtgctacgttcttccgcagagacaggttttcacatgttaaaaaa
tatgaggttgaatttaataaggctgcacagtctttgacagatgttgcaatggcagctggt
cagaagaaagttgctttgagtcgtttgataaaggataatgtagccctcattgtggtcttg
gaagcgaaatttagtaattatggcactgataatcccggaaagaggcagctaatctgtgtg
gcaaacacccatgtaagcgttcatcatgagcacaaggatgttaagctttggcaggttcat
actcttttaaaaggactggagaaaattgctgttagtgctgatattccaatgttggtctgt
ggagattttgactctgtgcccggaagcgctcctcatgcacttcttgcaaatggcaaagtt
gatcctttgcatccagatctggccgtagatcctgtgggaattctgcgtcctacgaacaag
ataactcaccagcttccattggtaagtgtgtactcgtcatttgctagaatggcaggagta
agtcctggattagagcaacagaggaggagaatggatgcatcgacacatgaacctttgttc
acaaattgcaccagggattttattggcactgttgattacatattctatacagctgactct
ctgtcagtggaatctctgttggagctcctagatgaggaaaacctacgcaagaacactgca
attccttctcctgaatggtcatctgatcatatagcactcctggcacaatttcggtgcaag
cctagaattagacgctga
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