Musa acuminata (dessert banana): 103989576
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Entry
103989576 CDS
T03447
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
mus
Musa acuminata (dessert banana)
Pathway
mus03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mus00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103989576
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mus03019
]
103989576
Messenger RNA biogenesis [BR:
mus03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
103989576
mRNA degradation factors
5'-3' decay
Decapping complex
103989576
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
103989576
NCBI-ProteinID:
XP_064970604
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Position
BXJ2-6:complement(41994516..42005947)
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AA seq
877 aa
AA seq
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MRGLDAEGSPKPNDGARESGDGAAGNSLFDASRYAFFGKDVMEEVELGGLEDDDNDGNGG
FVGLDDEEYKFPSVSDREFEGLGSLSEIDDLENTFRKLNRVVSEPRSVGVIGDRGSFSRE
SSSTADWAQEADFPSWIDQEILDAEDVQEGKRWWSQPDATLSQFSELKPLYRTSSYPQQQ
QQEHSSELNPVPKSSFTSYPPPGGQCYPSFNLTRHSSLPSVTAALQIPAPSPYSGPQHHM
GGLSHGLHYGVNSQFTPHGISSINIPRNHWLNQTSLYSREHPSQLSNLLQQQLPLPNGLI
PSRILSQQQHQRLQQVQPSLTHFLHLQPNIFSLHNPPPRKMKKFDAVIGMSNSRDHRSKS
SHRGRQNIWLSQQSSETGSLKTDSSCQFRSKYMSAEEIGSILRMQHSATHVTDPYVDDYY
YQACLAKKSAGSRLKHNFCPTVIKDPPSRSRGSNESHAYFQVDALGRVQFSSIRRPRPLL
EVDIPSSSGDDRKSSIKPLEQETMLAARITTEDCISLLLDVDDIDRVLQVNQPQDGGLQL
KRRRQVLIEVIAASLQLVDPLGPGKADHSVGFAPKDDLVFLRIVTLPKGRKLLCRYLHLL
IPGSHLTRVVCMAIFRHLRFLFGGLPSDSSAAETTTNLAKAVSLCACNMELSALSACLAA
VVCSSEQPPLRPLGSSAGDGASIIIKSVLDRATDLLTDPHAANSYTVSSRTLWQASFDAF
FGLLTKYCLSKYDSIMQMLLMQASSTAVVGSEATRAISREMPVELLHASLPHTNDHQRKV
LLDFAQRSMPVVRVSTHGDSWSSHEELRGSLSSVILWVEPSRPCGCHLIFIRKHHMLLAN
GGNGSILVFKSLSLFIISVAKVCTINLPWRFLDQSTE
NT seq
2634 nt
NT seq
+upstream
nt +downstream
nt
atgaggggactcgatgccgagggaagccctaaacctaacgacggggccagagaatcgggt
gatggcgccgccggtaattctctttttgatgcctcacgatacgcattctttggtaaggat
gtcatggaggaagttgagttagggggtctggaggatgatgataatgatggtaatgggggt
tttgttggccttgatgatgaggaatacaagtttccttctgttagtgatagagagtttgaa
ggcttaggatccttgtccgagattgatgaccttgagaacacctttaggaagctgaacagg
gttgtcagtgaaccaaggagcgtgggtgttattggtgatagaggatctttttctagagaa
agttcttctactgcagactgggcacaggaggctgattttccaagctggattgatcaggaa
atattagatgctgaagatgttcaggaaggcaaaaggtggtggtcacaacctgatgccact
ttgtctcagttttctgaactaaaaccattgtacagaacatcctcctaccctcagcaacaa
cagcaagaacactcaagtgaactaaatcctgtacccaagtcatcttttacttcgtatcct
ccgcctggtggacaatgttatccttcgttcaacctcacacgtcattcaagcttgccatct
gttactgctgcattgcagatacctgctccatccccttattctggtcctcaacatcacatg
ggaggattatctcatgggcttcactatggtgtaaattcacagtttacacctcacggcatt
tcatcaatcaacattccaaggaaccattggttgaatcaaactagcctttattcacgggaa
catcccagccagttgtctaacttgttgcagcaacagttacctctacccaatggtttaatt
ccttcacggatattgtcacagcagcaacatcagagattacagcaggtccagccatctctc
acccatttcctgcacttgcaacctaatatattcagcctccataaccccccacctcgaaaa
atgaaaaaatttgatgcagtcattggcatgtctaattcgagagaccatagatcgaaatca
tctcataggggaagacagaatatatggttgtctcaacaatcttctgaaactggcagcctg
aagactgacagcagttgtcaatttagatcaaagtacatgtcagccgaagagataggaagt
attttgaggatgcagcattcagcaactcatgtcactgatccttatgtagatgactattac
tatcaagcttgtcttgcaaaaaagtcagctggttcaagactgaagcacaacttctgtcca
acagtaataaaggatcctccatcacggtcacgtggtagtaatgaatcacatgcatatttt
caggtcgatgcacttgggagggttcaattctcttcaatacgtaggcctcgccctctcctt
gaggttgatataccatcttcatcaggtgatgatcggaagtcttctataaagccccttgaa
caagagacaatgttggctgctagaatcaccactgaagattgtattagccttcttcttgat
gtagatgatattgatcgggtgttacaggttaaccaaccacaagatggtgggttgcaactg
aagcgcagaaggcaggttctgattgaagtgattgctgcatcacttcagcttgttgatccc
cttggccctggtaaagctgatcattcagtaggttttgccccaaaggatgaccttgttttc
ctacgcatagttactcttcctaagggccggaagctcctatgtcgctatcttcaccttcta
atccctggaagtcatcttactcgggtagtctgcatggccattttccgccaccttagattt
ttattcggtggtttaccttcagactccagtgcagcagaaacaacaaccaatctggccaag
gctgtgtctttatgtgcgtgcaacatggaacttagtgcactcagtgcttgcctggctgca
gtggtctgctcatctgaacaaccacctcttcgccctcttggaagttcagctggtgatgga
gctagcataattataaagtctgttctggatcgagcaacagatcttctgacagaccctcat
gctgcaaacagttatactgtctctagtcgaactttatggcaggcatcgttcgatgctttc
tttgggcttcttactaagtactgtcttagtaaatatgacagtataatgcaaatgttactc
atgcaggcatcaagcactgcagttgtgggatctgaggcaaccagagctattagcagggag
atgccggttgagttgttgcatgcaagtcttcctcacacaaatgaccaccagcgtaaggtg
ttacttgattttgctcagagatccatgcctgttgttcgtgttagtactcatggagattcc
tggtcctcacacgaggagctgcgaggttctctctcttctgtaatcttgtgggtcgagcct
tcaaggccgtgcggatgccaccttatatttataagaaagcaccacatgctacttgcaaat
ggtggtaatggttctattttagtgttcaaaagtttgtctttgttcataatctcggtggca
aaagtgtgtaccataaatcttccatggagatttctagatcaatcaactgagtaa
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