Musa acuminata (dessert banana): 103990470
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Entry
103990470 CDS
T03447
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
mus
Musa acuminata (dessert banana)
Pathway
mus03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mus00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103990470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mus03019
]
103990470
03036 Chromosome and associated proteins [BR:
mus03036
]
103990470
Enzymes [BR:
mus01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103990470
Messenger RNA biogenesis [BR:
mus03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
103990470
mRNA degradation factors
5'-3' decay
Decapping complex
103990470
Chromosome and associated proteins [BR:
mus03036
]
Eukaryotic type
Gene silencing
piRNA pathway
103990470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
103990470
NCBI-ProteinID:
XP_009408278
UniProt:
A0A804IS97
LinkDB
All DBs
Position
BXJ2-4:complement(31850684..31860012)
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AA seq
492 aa
AA seq
DB search
MNPRGRYPPPGMGNGRGGSASTNPGFYSRNSHHQHHHQQQQQQYVQRNPVQVQPNQHFQQ
QQWSRRNQLGGDSGSGDVVKSVQPETSDTSLQDWKAQLKMPPPDTRYKTEDVTATKGNEF
EDYFLKRELLMGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKI
DQDHNAIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLL
AGTPGRILDLAKKGVCVLKDCSMLVMDEADKLLSPEFQPSIEQLIQFLPANRQILMFSAT
FPVTVKDFKDRYLPKPYIINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSII
FCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGID
IQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQ
IPPQIDQTIYCR
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atgaaccctcggggtagatatcctccccccggaatgggcaacggccgagggggtagcgcg
agcacaaaccctggtttctattcgaggaactctcaccaccaacaccaccaccagcaacag
caacagcagtatgtgcagcgaaatccggtgcaagtccagccgaaccagcacttccagcag
cagcaatggtcgagaaggaatcagttaggaggcgattctggctctggcgacgtagtgaaa
tcagttcaacctgagacctctgacaccagtttacaggattggaaagcacagttgaagatg
ccacctcctgatacacgctacaagacagaggatgtgactgcaacaaaaggaaatgaattt
gaagactattttctaaagcgggaacttcttatggggatatatgagaagggttttgaaaag
ccttcacctattcaagaagaaagcattcctatagcactcactggcagtgacattcttgcc
agagccaaaaatgggactgggaagacagctgcattttgtattcctgcacttgaaaaaatt
gaccaagatcacaatgccattcaagttgtcatattggttcctacaagagagttagcactt
cagacatcacaagtttgtaaggaactaggaaaacatttgaagattcaggttatggtaacc
actggaggaaccagcttgaaggatgatattatgcgtttatatcaacctgtccacttgctt
gctggaacacctggtcgaatacttgatcttgcaaagaaaggtgtttgtgttttgaaggat
tgttcgatgcttgttatggatgaggctgacaagcttctctctcctgagtttcaaccatcg
atagaacagcttattcagtttcttcctgccaataggcagattttaatgttttcggctaca
ttccctgtaacggtgaaggattttaaagacagataccttccaaaaccatatatcatcaat
ctaatggatgaactcacactgaagggaataacacaatactatgcttttgttgaggaaagg
cagaaggttcactgccttaatacactgttctcaaagcttcaaattaaccaatccattatt
ttctgtaactcggttaaccgggtggagctattagcaaagaaaatcactgagcttggttat
tcttgcttttacatccatgctaaaatgttgcaagatcacaggaatcgtgtcttccatgac
ttccgcaatggtgcatgcaggaatcttgtttgtacagatctgtttacaaggggaatcgat
attcaagctgttaatgttgtcatcaattttgattttccaaagaattctgagacatatctg
cacagggttggtcgttcaggcagatttggtcaccttggtttagctgtcaatcttatcacc
tatgaggatcgctttaacttgtataggattgagcaagaacttggcacagaaataaaacag
attcctccgcagattgatcagactatatactgcaggtga
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