Musa acuminata (dessert banana): 103996964
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Entry
103996964 CDS
T03447
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 24 isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
mus
Musa acuminata (dessert banana)
Pathway
mus03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mus00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103996964
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mus03041
]
103996964
Enzymes [BR:
mus01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103996964
Spliceosome [BR:
mus03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
103996964
Complex B
103996964
Complex C
U2 SnRNP specific factors
103996964
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
103996964
NCBI-ProteinID:
XP_009416320
UniProt:
A0A804HV88
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Position
BXJ2-1:complement(10742649..10747239)
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AA seq
826 aa
AA seq
DB search
MPCLSSPSHSAHNPRIQTLVRVSTSLTKSRISTLDSSLLPYLRLQDPNRSPFILFLLDLA
IAMSKRKFGFEGFGVNRPATYNFERTSAPQRLYVPPSSRGGGHDNHEDADLDNIDYDQPD
FPERSSPAGDDGEIDPLDAFMEGIQEEIRAPPPASVNPKDKDDKYKDDDEDDPVESFLRS
KKDTGLTLASEALHAGYDSDEEVYAAAKAVDLGMVEYDSDDNPIVVDKRKIEPIPALDHG
TIDYEPFNKDFYEEQPSISGMNEQEVEEYRKGLAIRVSGFDVPKPIKLFEECGFSPALMG
AITKQGYEKPTTIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVHIMDQPELDKGEG
PIGVICAPTRELAHQIYLEAKKFAKPYGIRVGAVYGGVSKLDQFKELKAGCEVVVATPGR
LIDLLKMKALTMLRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPYKVE
RLAREILSDPVRVTVGEVGTANEDITQVVNVISSDAEKMPWLLEKLPGMIDDGDVLVFAS
KKGTVDEIESQLIPNGFKIAALHGDKDQASRMDILQKFKSGIYHVLVATDVAARGLDIKS
IKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLITHKEARFAGELVNSLIAAGQDVP
AELMDLAMKDGRFRAKRDARKGSGGKKGGRRGKGGNGSGRGVRGVDFGLGIGYNPDTANA
ATSHSVPSRSAAVNSLRTGMMAQFKSNFVAASSNSEGNTSSTTRPSLSGFVSGGSIGGEA
YKAQSLTTFIPATKNEGSRIENGNQKNSESVRDRPRERKRPSGWDR
NT seq
2481 nt
NT seq
+upstream
nt +downstream
nt
atgccttgtctctcttccccttcccatagcgctcacaatccccgaatccaaacccttgtt
agggtttccacctctctcaccaaatcccgtatatcgaccttggattcctccctccttccc
tatctccggctccaggatccgaaccgtagtccctttattctctttctcctcgatctcgcg
atcgccatgtcgaagcggaagtttggcttcgaaggattcggcgtcaaccgccccgccacc
tacaactttgagcgcacatcggcaccgcagcgcctttacgtcccaccttcctctcgcggc
ggcggccacgacaaccatgaggacgccgaccttgacaatatcgactacgaccagcccgac
ttccccgagcggtcgtcccccgccggtgacgacggagagattgacccactcgacgccttc
atggaggggatccaggaggagatccgggcgccgcctcctgcctctgtgaatcctaaggac
aaggacgacaagtacaaggacgacgatgaggacgacccggtcgagagcttcttgcggtcc
aagaaggacactggattgactctggcgtcggaggctcttcacgccgggtatgactctgac
gaggaggtgtatgcagcggcgaaggcggttgatttgggtatggttgaatatgattcagac
gataacccgattgtagtggacaagaggaagatcgagccaattccagcattagatcatggc
accattgattatgagccgtttaacaaggacttttatgaggagcaaccgtcgatctcagga
atgaacgagcaagaagttgaagaatatcggaaaggtttagccatacgggtttcaggtttt
gatgtaccaaagccaatcaaactctttgaagaatgtgggttttctcctgcactaatgggt
gctatcacaaagcagggctatgagaaaccaacaacaatacagtgtcaggctctgcccatt
gtactttctggtagagatgttattggcattgcaaaaacaggctctggtaaaactgctgca
tttgttcttcctatgattgttcatattatggatcagcctgaacttgacaaaggagaaggt
ccaataggcgtaatatgtgcccctactagagaattagcacatcagatttatctagaagct
aagaagtttgcaaaaccatatggaatacgagttggagctgtgtatggtggtgtctccaaa
cttgaccaattcaaagaactcaaagcaggttgtgaagtagttgttgccacaccaggaaga
ttgatagacttgctgaagatgaaggcccttacaatgcttagggcaacttatcttgtgcta
gatgaagctgatcggatgtttgatcttggctttgagccacaaatacgatctattgttggt
caaattagaccagatcgtcaaactttacttttttctgccactatgccttacaaagttgaa
cgtttagcaagagaaattctctctgatcctgtaagggttacagttggtgaggtaggaacg
gcaaatgaggacattacgcaagttgttaatgtaatttcttctgatgctgagaagatgcct
tggcttttagaaaaactacctggaatgattgatgatggggatgttcttgtatttgcttcg
aagaaaggtacagtggatgagattgaaagccagttgattccgaatggatttaaaattgca
gcccttcacggtgacaaggaccaggcctcccgcatggacattttacagaagtttaaatcg
ggaatttaccatgtccttgttgcaactgatgttgctgcccgtgggcttgatataaagtca
attaaatcagttgttaattttgatattgccagagatatggacatgcacgtccatcgtatt
ggtcgaacaggccgtgctggggataaagatgggactgcatacacacttatcacacataag
gaagcacgttttgctggtgaattagtcaacagcttgatagctgctggtcaagatgtccct
gctgagctaatggatcttgctatgaaggatgggaggttcagggccaaacgtgatgcaaga
aaaggttctggtggaaagaaggggggacgcagaggaaaaggtggcaatggaagtgggaga
ggtgtacgtggtgttgattttgggcttggtatcggctacaatcctgatacagcaaatgca
gcaacatctcattctgttccaagcagatctgctgctgttaattcactgagaacagggatg
atggcacagttcaaaagcaattttgttgctgcctcttctaattctgagggtaacacatcc
tctaccacaagaccatctttatctggttttgtctctggtggttcgattggtggggaggca
tacaaagcacagtcgcttactactttcattcctgccactaagaatgaaggaagcagaatc
gagaatgggaaccagaagaactctgaaagtgtgagagatagacctcgagaaaggaagcgg
ccttctgggtgggatcgttaa
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