Musa acuminata (wild Malaysian banana): 103997175
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Entry
103997175 CDS
T03447
Name
(RefSeq) uncharacterized protein LOC103997175 isoform X2
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
mus
Musa acuminata (wild Malaysian banana)
Brite
KEGG Orthology (KO) [BR:
mus00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
mus04131
]
103997175
Membrane trafficking [BR:
mus04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
103997175
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS13_ext_chorein
VPS13_mid_rpt
Vps62
VPS13_VAB
PH
C2
Motif
Other DBs
NCBI-GeneID:
103997175
NCBI-ProteinID:
XP_009416610
LinkDB
All DBs
Position
9:4729055..4804040
Genome browser
AA seq
3347 aa
AA seq
DB search
MPFLYRLDQVLLLTVLMVIAVLYAQEMELATIEATRRSRTGSAPGGNSWLGSLIATIIGN
LKVTISNVHIRYEDTISNPGHPFCTGFTLSKLAAFTMDEQGNETFDTSGALDKLRKSLQL
ERLAIYHDSDSFPWNLNKRWEDLTPKEWTEIFQEGINEHSRDEVAIRALNRRYLVSPING
VLKYHRLGKQERQDPEIPFEKSSLVLSDVYLTVSESQYYDGIKLLETFSRYKTRVDVSHL
RPVVPISQDPHAWWQFAMLAGLQQKKLCYWFSWDKIRHLCQLRRRYVQLYVNVLQQSPDV
DISEIRQIERILDSKVIVLWRLLAHAKFGYVKSKEASEQKESFKRGWWSFRWRTSGESSV
ANKSNESQLAEEEKLTKEEWQAINEMLSYQPDEDTSSILGKDVQSMIQYLVEVSIGKAAA
RIININETEIVCGRFEQLYVTTKLYPKSIHCNVSLKCCGLSSPEGSLAESMISERKANAL
DASFIHAPVGEDVEWRLTATIAPCHVTILMESYERFLEFVNRSNAISPTVAMETATALQM
KLEQVTRRAQEQFHMVLEERSRFALDIDFDAPKVRVPLNHSASIVKGSLFLLDFGHFTLR
TRDALRGERQGLYSRFYISGRDMAAFFIDDFSKEKDLTTMNDMSQTSTSPTSEDIYPFYS
ILDRCGMSVVVDQIKVPHPNYPSTRVSIQVPNLGIHFSPERYCRITELLDIFYGLSKSNE
QNLSGQLQTGHSPWHPVDLATDARTLVWRGLGNSLAEWHPCYIVLSGLYLYVLESEVSHN
YQKCFRMAGRQVLEVPPASVGGSAYAVAVSFRGVDIQKALESTNTLIIEFHDEESKATWL
KELVQATYRASAPLAMDIFGESVNNSSSQSSEDLFSIPGSSDLIINGTLIETKLSIYGKL
DRNSNTAEGPIIELIASGGKVNFTRSASDLIVKMKLHSLKIKDELQGCLSNFPEYLVCSV
MSDKLKARKSDTLDVSETIFEPFSLEEDDCFTDALPDFLSTPDQSSCSNYIDLASNLGPG
ADHFENHAGVNHNDPSDHDKDHVNGKAAEIFYEAQDSNISDFVAITFLTRYPDSRLYVGI
DTQMIIRMSALEFFCNRPTLVALIEFGFDLSMVNYRESSENCTDVATPNTKCTEKKEENC
RTLVKGLLGHGKSRVVFNLIMDVDSFCVFLNKEDGSQLAMFIQESFLLDLKVHPGSISID
GTLGNTRLRDMSLGPDSQWSWLCDIRHQGIESLIKFTFHSYSTEDDDYQGHDYSLSGRLS
AVRIVFLYRFVQEITSYFMELASPHTEEAIKLVDKVGGFEWLIQKYEIDGATAVKLDLSL
DTPIIIVPMNSMSNDYMQLDLGQLQVKNSFSWHGCKENNPSAIHLDILHAEIHGINMAVG
VGGVLGKPLIREGHGIHIEVRRSLRDVFRKVPNLSLKVQIGLLHGIMSDKEYAIIINCIY
MNISEVPKLPPSFRDNLTGMKESIRMIADKVNLNSQILLSRTVIILAVEVHDALLELRND
HEEESPLARIALEGLWVSYRSTSFSEADLYVTIPKLSVLDIRPDTKPEMRLMLGSHTNIY
KPGLLNLGPGGTDLIIPKDGVPAKNLESATDTGASYLTMLILDYRWRASFQSIVIRIQQP
RVLVVIDFLLAVAEFFVPSLGSITGREETMNPKNDALINSDDIILSGSLYMQRDEVVHLS
PRRQLIVDGCASSEFIYDGGGGTLSLSEEYDIKGQSYTGPIIIIGRGKRLRFRNVKIENG
ALLRKCTYLNNGSSYSVSADDGVEICLLDSLTSDIAKLGSAETQQGQQTNDPIADISATS
SQILSFTFEAQIISSEFTFYDSSKLYNDSLHVEKLLRAKMDLSFMYASKENDTWVRSLVK
DLAVEAGSGLVVLAPVDISGGYTSVKEKTNISITSTDICIHLSLSVASLLLKLQNEALAA
LQFGNVNPLASCTNFKQIWASPKGDLPGYNLTFWRPQAPPNYSILGDCVTSRSIPPSQVV
LAVSNTYGRVRKPLGFKFIGLISNILALGDVTKLNNDSDCSIWMPIPPPGYSAVGCVAHP
GSQPPPNHIVHCLRADLLTSTNFCGCMCFIPPNSGVPSGFSIWRVDNVVGSFYAHNSVDS
PPQVESFNLHQILLRNPDDISSKETTENKLHYEQGGSSNSSSGWDILRSLSGAAAYCLST
PHFERIWWDKGCDTRRPISIWRPVRRPGFSALGDCVTEGLEPPALGLVFKCDYPAISARP
VQFTKVAHVIGKGLDEAFFWYPTPPPGYASFGCIVTTTDESPKKDLVCCPRLDLVSQANV
AVEPISRSSTSKGSNCWSIWKVENQACTFLARSDLKTPSTRLAYKISDYVKPKARENVAA
ELKLGLLSVSVSDNFCGTMTPLVDATVTNMNLATHGRLEAMNAVLICSIAASTFNRQIEA
WEPLIEPFDAILKLETYYTSKNSQSKVGKQIRFSATTSLNLNVSAANLETLTETIVSWGR
QNDVEHKSSKKEDDENFAQYDELISSALDDDDVQKVILENQLGCDVYLRVFEQNSNSEIT
KFLQHDKEVSMSLPPPRFLDKLNVVTKSRESRYYVAIQILDSKGLIIVDDGNSHEYFCAL
RLLIEGKVSEQYKLFPQSARTRCVSPLISGNGLAEGSAKWNELFIFEVPEKGMANLEVEV
TNLASKAGKGEVIGALCIPVSSSASMLKRAASIKMLQQAAKFQEFSSYPLRCKGPIVRNE
ESKDCGALVISISYIDQNTEKNFEITDRTVPANRDVGFWVGLGPDGPWENFSSVLPLSAV
VPKLLNKQAMAFEVIMRNSKKHAILRSLALLVNDADIKLEVSLFSSISLISPVLNTGTSS
SVTVTEEVFENQRYQPISGKSSSTCANDPARWSTRDYSYSSKDFFEPALPTGWRWTSAWK
IDKSQFLDSDGWAYGTDFQGFNWPPNSSKPSSRSAFDFVRRRRWTRTREQLPVENVDNRR
NVIAVLSPGSSTYLPWTSMTKDRDLCLQVRPFSESSHESYTWSQMFTLGSRKEQPVNVQP
QLSRQSTSKCLDFTSQNYVLRLNQLEKKDLLSYCTPSNSAQRCFWLSVGTDATVLHTQLN
APVYDWKISLNSALRLENKLPSETEYAVWEKTFDGKMIERQHGVILPGESASVYSADIRK
PIYFTMFVQGGWVLEKDAVLILDLLGLDHASSFWMLQQQTNRRLRVSVEHDLGGTDASPK
TIRFFVPYWIQNDSSVPLSYRIVEVEPVDSSDADSLLISRAVKSAKFSMRSSSKSFDRRN
SNTRRNIQIYDVIEDISSKFVMFSPQDFMNRSGSMSFQSRGSSTCTSRVGISIAVSHCDK
YSLGISLLELESKERVDFNAFASDGSYYRLSAQLKMASDRTKVFVGP
NT seq
10044 nt
NT seq
+upstream
nt +downstream
nt
atgccttttttatatagactggatcaagtgctactcttaactgttttaatggttattgct
gttttatatgcacaggagatggaattggcaaccattgaagcaaccaggagatcgagaaca
ggaagtgcacctggtgggaactcatggctgggatctcttatagcaactataattggcaat
cttaaagttactatcagcaatgttcatatcagatatgaggacactatcagtaacccaggg
catccattttgtactgggtttacgttatcaaagcttgctgcttttacgatggatgaacag
ggtaatgaaacatttgatactagtggtgctcttgataaactgcggaagtcattacaactt
gagaggctggccatatatcatgattctgacagctttccatggaacctcaataagagatgg
gaggatttgacccctaaggaatggaccgagatattccaagaagggattaatgaacattct
agagatgaagttgccatccgggcattgaatcgtaggtacctagtatcacctattaatgga
gtccttaaatatcatcgtcttggaaagcaagaaagacaagatcctgagatcccttttgag
aaatcttcgcttgttctgagtgatgtttatttaactgtttctgagtctcagtattatgat
ggcataaagctccttgaaacattttcaagatataagacacgcgttgatgtatcccatctg
agacctgtagtgccaatttcacaggatcctcatgcatggtggcagtttgctatgctggct
ggcttacagcagaaaaaactgtgctactggttctcgtgggataaaattagacatctttgc
cagctccgtcgacgttatgtacaattgtatgtaaatgttttgcaacaatcacccgatgtt
gatatttctgaaattcggcagattgagagaattcttgattccaaagtgattgtactctgg
aggttgctggcacatgctaagtttggatatgtgaagtcaaaagaagcatcagaacagaaa
gaatctttcaagagaggctggtggtcattccgatggcgcacttctggagagtcttctgta
gcaaataaatcgaatgaatcacagttggccgaagaggaaaagttgaccaaggaggaatgg
caagcgataaatgaaatgttgagctaccagcctgatgaggacacaagctccattttagga
aaggatgtccagagtatgatacagtaccttgtggaagtatccattgggaaggctgctgct
cgaatcatcaatatcaatgagacagagatagtttgtggtagatttgaacaactttatgtc
accaccaagctgtatcctaaaagcattcactgtaatgtgtccttgaagtgttgtggctta
tcgtctcctgaagggtcacttgcggagagcatgatcagtgaaaggaaggctaatgctctt
gatgctagttttatacatgcacctgttggtgaggatgtagagtggcggcttacagcaact
attgctccatgccatgtaacgatcttgatggagagctatgagcggtttttggaatttgtg
aacaggagtaacgctattagccccacagttgctatggagactgctactgctttacagatg
aagctagaacaagtgactcgaagagcccaagaacaatttcacatggtactggaagagcga
agcagatttgcacttgatattgattttgatgctccaaaagttagggttcctctgaatcat
agtgcgtctatagtgaaaggtagcttgtttctgctggattttgggcattttacattgcgt
acccgggacgcgttacgtggtgaaaggcagggtttatactctcgcttttatatatcagga
agagacatggctgctttttttatagatgacttttccaaagagaaggatctcactactatg
aatgatatgagtcaaacttcgacatcacctacttcggaggacatctatccgttttattct
attcttgatcgttgtggcatgtcagttgttgttgatcagatcaaagtaccccatccaaac
tatccatcaaccagggtttctattcaagttcccaaccttggtattcatttttctccagaa
agatattgcagaataacggaactcttagacatattctatggcttgagtaaaagcaatgag
cagaaccttagtggacagctgcaaactggtcattcaccttggcatcctgttgatctagca
actgatgctagaactctagtttggcgggggcttggaaattctttggctgagtggcatcct
tgttatattgttttatctggtttgtatctttatgttttagaatctgaagtttctcacaac
tatcaaaaatgtttccgcatggctggccgacaggtacttgaagttccaccagcaagtgtt
ggggggtcagcttatgctgttgctgttagcttcaggggagttgatattcagaaggcactg
gaatcaactaatactctgattattgaatttcatgatgaagaatcaaaggctacctggctg
aaagaacttgttcaagcaacctatcgtgcttctgctcctcttgcaatggacatatttgga
gaatcagtcaataatagttcatcacaatctagtgaagatctttttagtattccagggtca
tcagatcttattatcaatggcacattgattgaaactaagttgtctatatatggaaaattg
gatagaaattctaatactgcagagggtccaatcatagaattgattgctagtggaggaaag
gtgaactttactcgatctgcaagtgacctgatcgtgaaaatgaagctgcattctttgaag
attaaagatgaacttcaaggttgtctgtcaaattttccagaatatctagtgtgttctgtg
atgagcgataaattaaaagctcggaaatctgatacattagatgtcagtgaaacaattttt
gaacctttttccctggaagaagatgattgctttacagatgcattgcctgatttcctttct
actcctgatcagagctcttgttcaaactacattgacctggcaagcaatttagggcctggt
gctgatcattttgagaatcatgctggagtcaaccataatgatccttcagatcatgataaa
gaccacgtgaatgggaaggctgctgagatattttatgaagcacaagacagtaatatatct
gattttgtggccattacatttttgactaggtatcccgattcacgtctgtatgttggtatt
gacactcagatgattatccgaatgtctgctttagaatttttctgcaacaggccgacactt
gttgctttgatcgaatttggctttgacctgagcatggttaattatagagaaagctccgaa
aattgtactgatgttgcaacacccaacacaaaatgcactgagaagaaggaagaaaactgt
cggactctagttaaaggattgcttggtcatggaaagagtcgggtagttttcaatctgatt
atggatgttgacagtttctgtgtgtttcttaacaaggaggatggttctcaacttgcaatg
ttcatacaagaaagttttctgctggatctgaaggtacatccaggttctatctccattgat
ggtacacttggaaatacgaggcttcgcgatatgtcacttggcccagatagtcaatggagc
tggctttgtgatattcgtcaccaagggattgagtctcttatcaagttcacattccactct
tacagtactgaagatgacgattaccaagggcatgattacagcttgagtggacgtctttca
gcagtacgcattgtttttctgtaccgttttgttcaggagataacttcatattttatggag
cttgcttctccgcacactgaagaagcaattaagcttgtggacaaggttgggggttttgaa
tggcttattcagaaatatgagatcgatggtgcaactgctgttaaactggacctatccttg
gacactccaataattattgtgcccatgaattccatgagtaatgattatatgcaactagat
cttggacaactccaagtgaagaacagttttagttggcatggttgcaaggaaaacaatccc
tcagctatacatcttgatattcttcatgctgagattcatggaattaacatggcagttgga
gttggtggagttttagggaaacctttgatacgagaaggtcatggtattcatattgaggtg
cgacgaagcttgagagatgtcttccgtaaagttccaaacctttctctgaaagtacagatt
ggcttactgcatggtatcatgtctgataaggaatacgctatcataataaactgtatttac
atgaacatttcagaagtgcctaaacttcccccaagttttcgtgacaatttaactggaatg
aaggagtctattcgtatgattgctgataaagtcaatttgaacagtcaaatcttactctct
cgtactgtgattattctagctgttgaggttcatgatgctttgttggagctacgcaatgac
cacgaagaggaatctcctttagctcggatagctttagaaggtctttgggtttcatatagg
tcaacatccttttctgaagcggacctctatgtgacaattcccaaattatctgtgctggat
atacgtcctgatacaaaacctgaaatgcgactgatgcttggctctcacacgaatatatat
aagcccggtttgcttaatcttggacctggtggaactgatttgataatcccaaaagatggt
gtgcctgccaagaatctggaaagtgcaactgatactggtgcttcatacttgacaatgctg
atattggattatcgatggcgtgcatcttttcaatccattgtgatcagaattcagcaacca
cgtgttcttgttgttatagattttcttcttgcagttgctgaattttttgtgcctagtttg
ggttccattacaggcagggaggagactatgaatccaaagaacgacgcgctgatcaattca
gatgacataatactttcaggatctctttacatgcagagagatgaggttgtacacctctcg
cctagaagacagttaatagtagatggttgtgcttctagtgagttcatttatgatggtggt
ggaggtacactatctttgagtgaggaatatgacataaaaggacagtcatatactggacct
attataataattggacgtggaaagagattgagattcaggaatgtaaagattgagaatggt
gcattgttgagaaagtgtacgtacctgaataatggtagcagctattcagtgtctgcagat
gatggggttgagatttgtttattggatagtttgacatctgatatagccaagctgggttct
gctgaaactcaacaaggccaacagacaaatgatccaattgctgatataagtgctacttca
agtcaaatacttagttttacgtttgaagctcagattatctcttcagaatttaccttctat
gatagttcaaaactgtataatgattccttgcatgttgagaagttactccgtgcaaagatg
gacttaagtttcatgtatgcttcaaaagaaaatgacacatgggttcggtccctcgtgaaa
gatctcgctgttgaagccggttcaggtcttgttgttctagcaccagttgatatttcagga
ggatatacctctgtcaaggagaagacaaatatatccatcacatctacagatatatgcatc
cacctgtctcttagtgttgcttctctcttacttaaattgcaaaacgaggctcttgctgca
ttgcaatttggtaatgttaatcctttggcttcttgtaccaacttcaaacaaatatgggca
tcaccaaaaggagaccttcctggatacaatctcacattttggaggccccaagctcctcct
aattattctattctgggtgattgtgtaacatcaaggtccattcctccgtcgcaagttgta
cttgcagtgagcaatacctacggtcgggtccggaaaccacttggcttcaagttcattggc
ttgatctctaatattctggcattgggagatgtaaccaagctgaataatgattctgactgc
tcaatctggatgccaattccacctccaggctattcagcagtaggatgtgtagcacatcct
gggagccagcctcctccaaaccacattgtacactgccttcgtgctgatcttttgacatct
accaacttttgtggctgcatgtgctttattccgccaaattctggggttccttctggattt
agcatctggcgtgttgataatgttgttggttcattttatgcacataattcagtggacagt
cctcctcaggtagaaagtttcaatttgcaccagattcttctgcggaatcctgatgatatc
agctcaaaggaaacaacagaaaacaagctacactatgaacaaggtggtagcagtaatagt
tcttctggatgggatattttgagatctttatctggagctgctgcttattgtttatctact
ccacactttgaaagaatttggtgggataaaggatgtgatacaagaaggccaatttcaata
tggcggccagtaagacgtccaggtttcagtgcacttggtgattgtgtgacagaaggttta
gaaccaccagcgttggggttagttttcaagtgtgattatccagcaatatctgcaaggcct
gtgcaattcactaaagttgcacatgttattggaaaaggacttgatgaagcatttttctgg
tatccaactcctcctcctggttatgcttcatttggatgcatagtgacaacaactgatgaa
tcgccaaagaaggatcttgtctgctgtcccagattggaccttgttagccaagcaaatgtt
gctgttgaacccatttctaggtcatccacttcgaagggctcaaactgctggagtatctgg
aaagttgaaaatcaggcctgcacttttcttgcacgttctgatctcaaaacaccatcaacc
cgcttggcatacaaaattagtgattatgtcaaacctaaagctcgtgaaaatgttgctgct
gagttgaagttgggacttctttcagttagtgtttcggacaacttttgtggaacaatgacg
ccacttgttgatgcgacagtgaccaacatgaatcttgctacgcatgggcgtctcgaggca
atgaatgctgtactgatttgttcaattgctgcatccacattcaataggcaaatagaagca
tgggaacctctaattgaaccatttgatgcaatattgaagttggaaacatattatacaagc
aaaaactctcaatcaaaggttggcaagcagattcgattttctgcaacaacttctctaaat
cttaatgttagtgctgcaaatctcgaaaccctgacagaaactattgtgtcatggggtagg
caaaatgatgtggagcacaaatcatcaaaaaaggaagatgatgaaaattttgctcaatat
gatgagttaatctcctctgcgttggatgatgatgatgttcagaaagtgattcttgaaaac
caacttggatgtgatgtttatctgagagtttttgagcagaactcaaactcagagattacc
aagttcttacagcatgacaaggaagtgtcaatgtccttgccacctccaaggtttttagat
aagctaaatgtagtaaccaaatccagagaatcacgctactatgttgccatacaaattctt
gattctaaggggcttattattgtggatgatggcaatagccatgaatacttttgtgcttta
cgattgttgattgagggtaaggtttcggaacagtataagctttttccacagagtgcaagg
acaagatgtgtaagcccattgatttcgggaaatggcttagctgagggatctgccaagtgg
aatgaactttttatatttgaagttccagagaagggaatggctaatcttgaagttgaggtt
acaaatcttgcttcgaaagctgggaaaggtgaagtcataggggcactttgtattccagtc
agtagcagtgcaagcatgctgaaacgtgctgcttcaataaaaatgctacagcaagcagct
aagtttcaagagttctcatcctatcctcttaggtgcaagggaccgatagtcagaaatgag
gaaagcaaagactgtggtgctcttgtaatttccatttcatatattgatcaaaatactgaa
aagaactttgaaattactgacagaacagtacctgccaatagagatgttggtttttgggtt
ggccttggccctgatggcccgtgggagaacttcagttcggttcttccactatcagctgtt
gttccaaaattacttaataaacaagctatggcctttgaagttatcatgaggaatagcaag
aagcatgctattcttagatctcttgctcttcttgtcaatgatgctgatatcaagcttgaa
gtgtctttattctcttctatatcacttatcagtcctgtcttgaacacaggaactagcagt
tctgtcactgtgacagaagaggtctttgaaaatcagagatatcaaccaatttctggcaag
tcatccagtacttgtgctaatgatcctgcacgctggagtaccagggactattcatattca
tctaaggacttctttgagcctgctcttcccactggttggaggtggacttcggcttggaaa
attgataagtctcagtttttggactctgatgggtgggcatatggaactgactttcagggt
ttcaactggcctccaaattcttctaaaccatcttctaggtcagcttttgactttgtgcga
agaaggcgatggacacgtacaagggaacagttgcctgtggaaaacgtagataataggagg
aatgtaattgctgttcttagtccaggatcatccacttatttaccatggacaagtatgact
aaggatagggacttgtgcttgcaagttcgtcctttttcagaaagttctcatgaatcttac
acctggagccagatgttcacccttggttccagaaaggagcagcctgtcaacgtccaacct
caactttctaggcaaagtacctctaaatgtttagattttacgtcacagaattatgttctt
agattgaatcagcttgagaagaaggaccttctttcatattgtactccaagcaatagtgct
cagcggtgtttctggcttagtgttgggactgatgccacagttcttcacacacaattgaat
gctcctgtttatgattggaaaatatctcttaattcagctctcagattggaaaataagctt
ccgagcgaaactgaatatgctgtttgggagaaaacatttgatgggaaaatgattgaacgg
cagcatggtgttatcttaccaggtgaaagtgcttctgtctattcagcagatattcggaaa
cctatttacttcacaatgtttgttcaaggtggctgggttttggaaaaggatgctgttcta
attttggatttactaggccttgatcatgcttcttcgttttggatgctccagcaacaaact
aacaggaggttgcgggtgagtgttgagcatgatctggggggaactgatgcttctccaaaa
acaataagatttttcgtaccttactggattcagaatgattcatcagtgccactttcatat
cgcattgtagaggtggaaccagtggacagctccgatgctgattctctattaatttctaga
gcagttaaatctgcaaagttttccatgagaagctcctcaaagtcttttgatagaagaaat
tctaatacaaggagaaacattcagatatatgatgttatcgaggatattagttcaaaattc
gttatgttctctccacaagattttatgaaccgtagtggcagtatgtcgtttcagtctcgt
ggcagcagtacttgtacctcacgagtaggaatatctattgctgtcagccactgtgataag
tacagtcttggaatctctcttcttgagcttgaaagcaaggagcgggttgattttaatgca
tttgcttctgatggatcatattacaggttatcagcacaacttaagatggcttctgacaga
accaaggtttttgtgggaccataa
DBGET
integrated database retrieval system
