Musa acuminata (dessert banana): 103999520
Help
Entry
103999520 CDS
T03447
Name
(RefSeq) zinc finger CCCH domain-containing protein 45 isoform X2
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
mus
Musa acuminata (dessert banana)
Pathway
mus03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mus00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
103999520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mus03021
]
103999520
03019 Messenger RNA biogenesis [BR:
mus03019
]
103999520
Transcription machinery [BR:
mus03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
103999520
Messenger RNA biogenesis [BR:
mus03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
103999520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH
Torus
zf-CCCH_2
zf-CCCH_3
zf-CCCH_4
Motif
Other DBs
NCBI-GeneID:
103999520
NCBI-ProteinID:
XP_009419568
UniProt:
A0A804KQN0
LinkDB
All DBs
Position
BXJ2-9:complement(49644457..49656101)
Genome browser
AA seq
700 aa
AA seq
DB search
MDEPEGSLNFDFEGGLDVAAPSVAAVAASGPLAPSDPTAAAASAGASSPSGTADRMAVAG
GNVSGRRSFRQTVCRHWLRGLCMKGDACGFLHQYDKDRMPVCRFFRQYGECREQDCVYKH
TNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPPVEEVLQKIQHLNSAYGSSNRFYHHR
NNNNSYNQQPDKNQLSSTPGLPNQNTGVKPVSSFEPSDVKLPQSLVQQSEQQQQQQQQLP
IPSLENQVPSISNALSNQTVRTASPLPQGQSRYFIVKSCNRENLEISVQQGMWATQRSNE
AKLNEAFESTENVILIFSINKTRHFQGCGKMTSRIGGFVGGGNWKYSHGTAHYGRNFSVK
WLKLCELSFNKTHHLRNPYNDNLPVKISRDCQELEPFIGEQLASLLYLEPDSELMAMLVA
AESKRDEEKAKGGGADEATDNPDIVLFEDNEEEESEEEESEEDDESGQAAHGRGRGRGMM
WQPHMPLVRGGRPMLGVRGFPPIMMGADGFGYGDGFSTPDLFGPRIFPQFGGPRFSGDFS
AGLVFSGRPPQPGAVFPMGNIGMMMGPGRAPFMGGMPMAGMGRANRPVGVPPFLHPPPAP
PLNSRAAKRDHRRPVSDRNDRYETGSDQGNRSQVMAGAVGGADDDGAYWQGERASDHKYG
PGKSFQNESEKSMDEIAPRRSRHSDGKWKRHVSEGETTLE
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atggatgaacccgaaggatccctcaacttcgatttcgagggcggcctcgatgtcgccgcc
ccttccgttgcggcggtggcggcctctggtcccctcgccccgtctgaccccaccgccgct
gcggcgagcgcgggagcctcctctccctctggcacggccgatcggatggccgtcgcaggc
gggaacgtttccgggaggcggagcttccggcagacggtgtgccgccactggctgcgtggc
ctctgtatgaagggcgatgcttgcggcttcctccaccagtacgacaaggaccggatgccg
gtgtgccgcttcttccggcagtacggagagtgccgcgagcaggactgtgtttacaagcac
actaacgaggacatcaaggagtgcaatatgtacaaatttggtttctgccccaatggacct
gattgtcggtatcgtcatgccaaacttcctgggcctcctcctcctgttgaagaagttctc
cagaagatacagcatctgaattctgcttatgggtcttcaaacagattttatcaccacaga
aacaataacaatagttataaccaacaaccagataagaatcagttgtcatcaactcctggg
ttacctaatcaaaatacaggagtcaaaccagtttcttcatttgaaccatcagatgtaaag
ctgcctcagtcgctagtgcagcagtccgagcagcagcagcagcagcagcaacaactgcca
attccatcattggagaaccaggtcccaagtatttcaaatgccttgtcgaatcaaactgtt
agaactgcatctccactccctcagggacaatctaggtattttattgtaaaaagctgcaat
cgggaaaatctggaaatatctgttcagcagggtatgtgggcaactcaaagaagcaacgag
gcaaaacttaacgaagcatttgagtccacagagaatgttattttgatattctcaatcaac
aaaactcgccatttccagggatgcggtaagatgacatctaggattggtggatttgttggt
ggagggaactggaaatattctcatggaactgcacattatggtcgaaacttttcagttaaa
tggttgaagctctgtgagttgtccttcaataaaactcatcatctcaggaacccatataat
gacaatctcccggtgaagataagtcgagactgtcaagagttggagccttttattggtgaa
cagttggcttcactgctttatctcgagccagatagtgagctcatggctatgctggtagct
gcagaatccaaacgtgacgaggaaaaggccaagggaggtggtgcagatgaggcaacagat
aatccagatatagttctgtttgaggacaatgaggaagaagaaagcgaggaagaagaaagt
gaggaagatgatgaaagcggccaagctgcacacgggagaggaagaggacgagggatgatg
tggcagccacacatgccactggtacgtggaggaagacctatgctcggtgttcgtggcttc
cctcctataatgatgggggctgatggatttggttatggtgatggtttctctacaccagat
ctttttggtccccgaatttttccacagtttggtggcccgagattttctggtgatttttca
gcaggcttggtcttttctggtaggcccccacagccaggggctgttttcccaatgggtaac
attgggatgatgatgggtcctggtcgggctccatttatgggtggcatgccaatggctggg
atgggtcgggcaaatcgtcctgtcggagtcccacctttcctacatccgcctccagctcct
ccactgaacagtcgggctgcaaagagggaccacaggagaccagttagtgatagaaatgat
cggtatgagactggatctgatcagggcaacaggagccaggtgatggctggggctgtcggt
ggagcagatgatgacggtgcatattggcaaggtgaaagggcttccgaccataaatatggc
ccaggaaaaagtttccaaaatgagagtgagaagagcatggatgagatagcaccaagacga
tcgaggcatagcgatggaaagtggaagcgccatgtgtccgaaggggaaactactctagag
tag
DBGET
integrated database retrieval system
