Musa acuminata (dessert banana): 135580964
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Entry
135580964 CDS
T03447
Name
(RefSeq) transcription initiation factor TFIID subunit 5-like isoform X1
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
mus
Musa acuminata (dessert banana)
Pathway
mus03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
mus00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
135580964
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mus03021
]
135580964
03036 Chromosome and associated proteins [BR:
mus03036
]
135580964
Transcription machinery [BR:
mus03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
135580964
Coactivators
SAGA/TFTC/STAGA complex
135580964
Chromosome and associated proteins [BR:
mus03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
135580964
STAGA complex
135580964
TFTC complex
135580964
SAGA complex
135580964
SLIK complex
135580964
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
TFIID_NTD2
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
NBCH_WD40
ANAPC4_WD40
Beta-prop_IFT122_1st
WD40_MABP1-WDR62_1st
WDR90_beta-prop_4th
Beta-prop_TEP1_C
Beta-prop_RIG_2nd
Beta-prop_WDR75_1st
Beta-prop_IFT140_1st
Beta-prop_SCAP
Beta-prop_WDR19_1st
Beta-prop_DCAF4
Beta-prop_EIPR1
Beta-prop_SPT8
Beta-prop_Vps41
Beta-prop_HPS5
Beta-prop_WDR35_TULP_N
LisH_PAC1
Beta-prop_IP5PC_F
WD40_like
WD_LRWD1
KNTC1_N
Beta-prop_VPS8
PALB2_WD40
LisH
Motif
Other DBs
NCBI-GeneID:
135580964
NCBI-ProteinID:
XP_064974978
LinkDB
All DBs
Position
BXJ2-7:complement(38147354..38165830)
Genome browser
AA seq
657 aa
AA seq
DB search
MVASGVPMEEEELQKAVVAYLRKKGFTKTEIALQEEQQNRLSSSSHTDLPLSRLENDPAR
YSGGYSKLRSWAYSSLDLYKHELLRVLYSVYIHCFMDLVAEGHMRDARTFFQTFREDHEL
MHLRDLQKLEGILSPSHLEEMELACSLRQNKVKIKICQYAYDLLLQYLQKTQSLTILGII
NERINFEVSPGQPISISDDMEVVALVGSNHDLAKQINQKEVRWGLLEDSVEDRLEKANSD
SEKAEAENKELDPEDNKRSVDGGKQAAPVKKPKKDKLVGATGKNVRSETSTAPVAPRVKP
DLTLPIMPMEVEKAILEDLRNRVQLSSSTLPSICFYTFINAHNGLNCSAISQDGSLVAGG
FSDSSLKVWDMSKIGQSAKPGENDSIPSEHFLGTEGEGSYTLFHGHSGPIYSATFSPLGD
FLLSSSSDSTIRLWSTNLNANLVCYKGHNYPVWDVQFSPVGHYFASSSHDRTARIWSMDR
IQPLRIMAGHLSDVDCVQWHANCNYVATGSSDKTVRLWDVQSGECVRIFIGHRSTVLSLA
MSPDGRFMASGDEDGTIMMWDLSSGRCISPLMGHSSCVWTLAFSREGSLLASGAADCTVK
LWDVTTSMKGQKIEESKPSSINRLRLLKALPTKSTPVYTLQFSRRNLLFAAGALSKC
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atggtagcttcgggcgttccgatggaggaggaagagctccagaaggcggtggtcgcgtac
ctgaggaagaagggcttcaccaaaaccgagatcgccctgcaggaagagcagcagaaccgc
ctctcctcttcctcccacacggatctccccttatccagattagagaatgatccggcacga
tatagcggtggttatagcaagctaagatcatgggcttacagttcactggatctgtacaag
catgaactactccgtgtgctctattcagtgtacatccactgcttcatggatcttgtggca
gaaggtcatatgcgagatgctcggacttttttccaaactttccgtgaagatcatgaactt
atgcatttgagggacttgcagaaattggaaggcattctttctccctcacatttggaggaa
atggaactagcttgttctttgcggcagaacaaagttaaaataaaaatatgtcagtatgcg
tacgacctcctccttcagtaccttcagaagacacagtctcttaccattcttgggataatc
aatgagcgtatcaattttgaagtctcccctggacagcccatctcaatttctgatgacatg
gaggttgtagctctagtcggaagtaatcatgatctagctaaacagataaatcagaaggaa
gttcgttgggggttgcttgaagattcagttgaagatcgcctggagaaggcaaattcagat
tctgaaaaggctgaggctgaaaataaggagcttgacccagaagataacaagaggtctgtg
gatggaggaaagcaagctgctccagtgaagaaaccgaaaaaggacaagcttgtaggtgcg
acggggaaaaatgttcgctcggagacaagcactgcccctgtggcccctcgagtaaaacca
gatctaactttgcccataatgcccatggaagtagaaaaagcaattctggaggatctacgt
aatcgtgtgcaattgagtagctcaacgctgccatccatatgcttctatactttcatcaac
gcacataatggattaaattgttcagctatatcccaagatgggtcattggttgctggtgga
ttttctgattcatctctgaaggtgtgggacatgtcaaagattggccaatcagctaaacct
ggagaaaatgattccattccaagtgagcattttttgggaacagagggtgaagggtcctat
acgttatttcatggtcactctggtcctatatattcagctacctttagtcctcttggagat
tttctgttgtcttcctcatcagattccaccattcgattatggagcaccaatcttaatgca
aatcttgtctgctacaaagggcataattaccctgtatgggacgtgcaatttagccctgtc
ggccactattttgctagttcttcacatgatcggactgctaggatttggtccatggacaga
atccaacctctaagaataatggctggacatctttctgatgttgattgtgtgcaatggcat
gccaattgcaattatgttgcaactggttctagtgacaaaactgtcagattatgggatgta
caaagtggggaatgtgtacgcatttttattggtcataggagcacagttttgtcattggca
atgtctcctgatgggcgatttatggcttctggtgatgaagacggtaccatcatgatgtgg
gacctctcaagtggtcgttgtatttcaccattgatggggcacagctcatgtgtctggaca
cttgctttcagtcgtgaaggatcactgcttgcttctggtgcagctgattgtacagtgaaa
ttatgggatgtcactaccagcatgaagggacaaaagatagaggagagcaaacctagcagc
attaatcggctgagactattgaaagctctccctaccaaatccacacctgtatatacattg
cagttttcaaggaggaatcttttgtttgctgctggagcactttcaaagtgctaa
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