Musa acuminata (dessert banana): 135582226
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Entry
135582226 CDS
T03447
Name
(RefSeq) transcription elongation factor SPT6 homolog isoform X2
KO
K11292
transcription elongation factor SPT6
Organism
mus
Musa acuminata (dessert banana)
Brite
KEGG Orthology (KO) [BR:
mus00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mus03021
]
135582226
03036 Chromosome and associated proteins [BR:
mus03036
]
135582226
Transcription machinery [BR:
mus03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
135582226
Chromosome and associated proteins [BR:
mus03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
135582226
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
SPT6_acidic
YqgF
HHH_7
Spt6_S1
HTH_44
Tex_central_region
HHH_9
SH2
Tex_N
Motif
Other DBs
NCBI-GeneID:
135582226
NCBI-ProteinID:
XP_018677976
LinkDB
All DBs
Position
BXJ2-2:complement(10103950..10118643)
Genome browser
AA seq
1715 aa
AA seq
DB search
MGGRAVVSDEEDEIEEDAEERAMEQDADDVGDRGNDDEEEDEEEEGQDEYEQDGFIVDDV
EEEEEEEKQNSDEERHRRKKKKRRDSEKNYVLDEDDYELLQDNNITGFHRPQPGSKFKRL
KKAGRDNEMDEQSGFSDDEELDRNSHGGRTAEEKLKRSLFGDDEVVPLEDIAEEEEQQEE
EEEDADIMGEEDEMADFIVDEEDVDETGAVVRKKKLKKKKSRQAPGVSSSALQEAHEIFG
DVDELLMLRKQGLAAVSGDGTWSEKRLEDEFEPFILSEKYMTTKDEIIRETDVPERIQLS
EDITGPPPTDDKSIEEESTWINSQLNSGGISPLVGYDQVVKEINKEEIGNVLTMMHVQKL
DIPFISMYRKELCLSLLKDPDAETPDNEETPKMKWHKVLWAVQTLDRKWLLLQKRKSALH
SYYNKRFQEEARRIDNETRLALNQQLFKSVIEALRDAKSEREVDDIDAKFNLHFPPGEVD
IEDGQFKRPKRKSLYSICHKAGLWEVANKFGASSEQFGLLLSLDKILDELEDGKETPEEI
AANFTCALFETPQDVLKGARHMAAVEIGCEPNVRKHVRSIFMEKAVVSTSPTPEGNMAID
PYHQLASVKWLCNKPLCEFVDAQWLLIQRGEEEKLLQVTIKLPEEIQKKLLSDASEYYLS
ERVSRSAQLWNEQRKMILEDSFLTFILPSMEKEARSLMTARAKNWLLMEYGKQLWTKVSI
APFKRKDADIDSEDESESRVMACCWGPGKPATTIVMLDSAGEMVDVLYAGSISVRSQAVA
EQQRKKNDHQRVLKFMTDHQPHAVCVGAANMACRQLKDDIYEVIFKIVEDHPKDVSQDLE
YISIVFGDESLPRLYENSRVSADQLPGQPGIVKRAVALGRYLQNPLAMVATLCGPGKEIL
SWKLCPLEHFLTPDEKYEVVEQVMVDATNQVGVDINLAASHEWLFAPLQFISGLGPRKAS
ALQRAFVRAGSIFNRKEIPMGKILRKKVFINAVGFLRVRRSGAAAASSHIMDLLDDTRIH
PESYDLAKNLAKDVYAEDVPNETNDMDDDVQEMAIEHVRERPHMLKVLDINEYAKSIFNR
YGTNKRETLYDIKMELLHGFQDWRTPFKEPAAEEEFAMLSGETDDTISEGRIVQVTVRHV
QESRIICAFDSGLKGMIFPDDFSDEGYDHEKVHEGDILTCKIKHVNKNRLVVYLTSKASD
LRKRPYNIHNRDPYYHEDEASLRSELEKARKDKERAKKHFRPRMIVHPRFQNLTADEAME
YLSDKEPGESIIRPSSKGPSFLTLTLKVFDGVYAHKEIVEGGKDHKDITSLLRLGRTLTI
DKDTFEDLDEVMDRYVDPLVTQLKHMLSYRKFRKGTKAELDDLLRAEKAANLMRIVYCFG
ISHEHPGTFILSYIRSTNPHHEYIGLYPKGFRFRKKDFDDVDRLVAYFQKNIDKPPPDAG
PSIRTLAAMVPMKSPAWVSSSGGYVGSASAGSNDGWRGDRERPSTPGSRTGDRFDSRSTG
SRDVHPSGLPRPGRGRGRGRGRENNFGSEDCDSDYGSAKWGSNENDGLSTFPGAKVQNSP
GRDPWGWGSAGSGGGQGGISTGGGNGGGDWGSGYATDRGGDKWGGGGIKGAWSEGGSGGS
SWGTGGNIGGGNGRSPAPGWGGNSSGGGDGGGGGWGGGTSFGGRPGGVLSEELANPNKSG
GGLAAGFGASSTGWSDSRRSIPSQPDTGNGWSGGW
NT seq
5148 nt
NT seq
+upstream
nt +downstream
nt
atgggcggacgagcggtcgtctccgatgaggaagatgagatcgaagaggatgcggaagaa
cgtgccatggagcaggatgctgatgatgttggcgataggggcaatgacgacgaggaggaa
gacgaggaagaagagggccaagatgagtacgagcaggatggatttatagtggacgatgta
gaagaggaggaggaggaggaaaagcagaacagtgatgaggagagacatagaagaaagaag
aagaagagaagagattcagagaagaactacgttcttgatgaggatgattatgagttgctc
caggacaacaacataactgggtttcatcgaccacaaccaggtagcaaattcaagcgcttg
aagaaggctggaagggacaatgaaatggatgaacaatctgggttttcagatgatgaagaa
ttagataggaacagtcatggtggccgaacagctgaagaaaaacttaagcgtagcctgttt
ggagatgatgaagtggtaccactagaagatattgccgaggaagaggagcagcaagaagaa
gaagaagaagatgcagacattatgggtgaagaagatgaaatggcagattttattgtggat
gaagaagatgttgatgagactggtgctgttgtaagaaagaaaaagctgaagaaaaagaag
tcgcgacaagctccaggagtttcatcatctgctttgcaagaagcccatgagatatttggt
gatgttgatgagcttctaatgctccgaaagcaaggacttgcagctgtttctggtgatggc
acctggagtgaaaagagactggaggatgagtttgaaccttttattctttcagagaagtac
atgaccacaaaggatgaaattatccgagaaacagatgtacctgagagaattcagctgtct
gaggacataactggaccacctccaacagatgataagagtatagaagaggagagcacctgg
ataaacagccagcttaatagtggtggcatctctcctttagttggttatgatcaagttgtc
aaagagataaataaggaggaaattggaaatgtcttgacaatgatgcatgtgcagaagctt
gatattcctttcattagcatgtaccgcaaagagttatgtcttagtcttttgaaggatcct
gatgccgaaacgccagataatgaagaaaccccaaagatgaagtggcataaggtactctgg
gctgttcagacattggacagaaaatggttgttgcttcagaagaggaagagtgctcttcat
tcctactacaacaagcgctttcaagaggaagcacgaagaattgataatgaaaccagactt
gcattaaatcaacaacttttcaaatcagtcattgaggccctaagggatgcaaaatctgaa
agagaggtcgatgatattgatgccaagttcaatctgcattttcctcctggtgaagttgat
atagaggatggtcaattcaagagaccaaagcggaaatcattgtacagtatttgccacaaa
gctggtctgtgggaggttgctaacaagtttggtgccagttctgagcaatttggattgctc
ctctcattagataagatattggacgagcttgaagatggaaaagaaactcctgaagaaata
gcagcaaattttacatgtgctttgtttgaaacaccacaagatgttcttaaaggtgctagg
cacatggcagctgtggaaattggttgcgaacctaatgttcggaaacatgtacgcagtata
ttcatggagaaggctgttgtgtcaacaagtcctactcctgagggaaatatggcaattgat
ccttatcatcagcttgcaagtgtaaagtggctttgcaataaaccattatgtgagtttgtg
gatgcacagtggcttctcattcagagaggtgaagaagagaaactgcttcaggtcacaatt
aaattaccagaagagatccaaaagaaattgttaagtgatgcttccgagtattatctgagt
gaacgtgtcagtagatctgcgcagctttggaatgaacaacgaaagatgatattggaagac
tcatttctgacttttattcttccatcaatggaaaaggaagctcgatcgctaatgacagct
cgagccaagaattggcttcttatggaatatggaaaacaattgtggactaaggtctctatt
gcccctttcaagcggaaggatgcggatattgattcggaggatgagtctgagtcaagagta
atggcttgctgttggggacctggaaagcctgcaacgacgattgttatgttggattcagca
ggagaaatggtggatgtgctatatgctggttcaattagtgttcgatcccaggctgttgct
gaacaacagagaaaaaaaaatgatcatcagcgagtcttgaagttcatgactgatcaccaa
cctcatgctgtctgtgtaggagcagcaaatatggcctgcagacaactaaaggatgacatt
tatgaagttattttcaagattgtggaagatcatccaaaagatgtcagccaagatttagaa
tacatcagtattgtcttcggtgatgaatctttgcctcgcctttatgagaattcaagggtt
tcggcggatcaactccctggtcaaccaggtattgtgaaacgtgctgtggcccttggccga
tatctgcaaaaccctttagctatggttgctacactttgtggaccagggaaagagatacta
tcttggaaactttgtcccttggagcattttcttactccagatgaaaagtatgaggttgtt
gagcaggttatggttgatgcaaccaatcaagttggtgtggatataaatctagctgcaagt
catgaatggctttttgctcctttacagtttatttctggtcttgggccacggaaagcatct
gctttgcaaagagcatttgttagggctggatccatttttaatcggaaagagatacccatg
ggtaagattcttagaaagaaagttttcattaacgctgttggttttttgcgtgttcgccgg
agcggggcagcagctgctagtagtcatattatggatcttttggacgacacaagaattcat
ccagaatcctatgatctggcaaagaatctggcgaaggatgtctatgctgaggatgttcca
aatgaaacaaacgatatggatgatgatgtacaagagatggcaattgaacatgttagggaa
aggcctcatatgcttaaagtgcttgacatcaatgagtatgccaagagcatttttaatcgg
tatgggaccaacaaaagggagactttgtatgatataaagatggagcttctgcatggattt
caggattggcggacaccttttaaagaaccagctgcagaggaggaatttgctatgctctct
ggtgaaacagatgataccatttcggaagggagaattgttcaggttacagtgcgccatgta
caagagtctcgtatcatttgtgcatttgattctggtttgaaagggatgatattccctgat
gatttctcggatgaaggatatgatcatgagaaggtacatgagggtgatattcttacctgc
aagattaagcatgtcaataagaatagacttgtggtttacttgacatccaaggctagtgat
ttaaggaaaagaccatacaatattcataatcgtgatccttattaccatgaggatgaggcc
agtttgcggagtgagttggagaaggctcggaaggacaaggaacgtgcaaagaaacatttc
aggccaaggatgattgttcatccccgttttcagaatttgacagctgatgaagcaatggag
tacctctctgataaggaacctggtgaaagcattatccggccaagttctaaaggaccatca
tttttaacattgacattaaaagtttttgatggagtttatgctcataaagagatagtggag
ggtgggaaagatcacaaagatatcacaagcttgcttcgtcttggaaggactctaacaata
gacaaagatacctttgaagaccttgatgaggttatggatagatatgttgatccattagtc
actcaactgaaacacatgctttcttaccgcaaattcaggaaaggaacaaaggcggaactt
gatgacttgctaagggcagagaaggcggcaaatttaatgaggatagtttactgttttggg
atttctcatgaacatccagggactttcattttatcatatattaggagtacaaatccacat
catgagtatattggattatatcccaaaggttttaggtttcggaaaaaggattttgatgat
gttgatcgcttggtggcttattttcagaagaatatagacaaaccaccacctgatgctggc
ccatcgatacgaacacttgctgcaatggtaccaatgaaaagccctgcatgggtttcctct
agcgggggatatgttggtagtgcttcagcaggcagtaatgatggctggagaggtgatcga
gaaagaccttccaccccaggttcaagaacaggtgacagatttgactccaggagcaccggc
agtcgagatgttcatccgagtggtcttcctcgtccaggtcgaggtcgtggacgagggcgt
ggcagagaaaataattttggttccgaggactgtgattctgattatggttctgcaaaatgg
ggttcaaatgaaaatgatggcttgagcacatttccaggtgccaaggttcagaattcccct
ggaagagatccttggggatggggcagtgcgggcagtggtggtggccagggtgggatcagc
actggaggtggtaatggtggtggggattggggaagtggctacgccactgataggggtggt
gacaagtggggtggaggtggcatcaagggggcttggagtgaaggtggcagtggaggtagt
agctggggaacaggaggcaatattggtggtggcaatggtaggagtcctgctcctggttgg
ggtggcaatagcagtggcggcggcgatggcggcggcggcggctggggtggaggcactagc
tttggtggcagacctggtggtgtcttgagtgaggaattagcaaatcccaataaatcaggt
ggtggtttggctgccggatttggtgcttcaagcacaggatggagtgattctaggagatca
ataccgtctcaacctgatacgggaaatggatggtccggtggttggtaa
DBGET
integrated database retrieval system
