Musa acuminata (dessert banana): 135585562
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Entry
135585562 CDS
T03447
Name
(RefSeq) uncharacterized protein LOC135585562 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
mus
Musa acuminata (dessert banana)
Pathway
mus03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mus00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
135585562
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mus03021
]
135585562
03019 Messenger RNA biogenesis [BR:
mus03019
]
135585562
Transcription machinery [BR:
mus03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
135585562
Messenger RNA biogenesis [BR:
mus03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
135585562
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
Motif
Other DBs
NCBI-GeneID:
135585562
NCBI-ProteinID:
XP_064951162
LinkDB
All DBs
Position
BXJ2-2:19632945..19641619
Genome browser
AA seq
1146 aa
AA seq
DB search
MEMESSRRSAMDRSREPGLKRPRLAAEDAAERDRAAVSTKRDPRLRAVGQPLDPRVPRPP
RVGDREGSDDAPRGGSHQELVAQYKTALAELTFNSKPIITNLTIIAGESLHAAREIAAVV
CANILEVPNEQKLPSLYLLDSIVKNIGRDYIKCFAARLPEVFCKAYKQVDSSIHSSMRHL
FGTWRGVFPPASLQIIEKELDFPPITNGSSKSESSKLDSQPQRPAHSIHVNPKYLEARQR
LQQSSRAKDISSDDFSGVVSTIDDAKRYDRITTVGNSRQWKNLPAKMPFYLQNVQCPQQE
FINNVIHDKKRLKVIRDHEYSSDLSQELDLGIGRVGERLKDGDGHNNAGTNFTEAQLNRM
NEFDVNHFYDNYQVSGSRRSNTLLSSVDLGDRDRSKLEASRSWKNSEEEEYMWDDMKTGT
EYGGTNNSLKGDWHNADADRSVRMQSGKWMSLKPEHVQCNLNKVNDAFPRLVKTNKGESK
VLPYEANDILNKQDFFEKLRPSSAVYDTNLGLRTEASSNSLSQRKASSEHHSSSFWTSHE
LPASLVGLDKNCSRAGQPEGQSLSFSAGLSTSICSSLPLPGLCSSVPSSTLGLHANIPGS
SGTFGQQWQQTLQLPSLSSDLTPSSTSIQQRKPHNSIDPDCLRSHLFSQTGHKPLHLAGS
VDFVSGKSHAQPLGASQSEITQHLEDLFDPTTSTSYNQPRDRPPLIQQSQYNLSQWQAAT
QSQPSRTETETQPSLRSETESQPSYQTEKLSPLPPGLGTHQAEKDSCTSHSNDPAVRQPH
TSSLLAAIMKSGGLLPNNSISNLQKPSVQPPLPVGPPPIQVTSAAPSNTPSVFPPLSLDD
TPDLKPPQFGDTIPPLPPGPPPPSSSSVAVNSDNSKTSGANVNSLSSLLSSLVAKGLISS
SSTELPTTSTAKLVDKAKDQCIGFPSNSMEQVPSFLTTSSGIPPISTEDPATSNSVAGAA
LSQSSAAELKNLVGFEFKSEIMRRFHPLVLTSLFDDLKHQCNICGLRFRLQEQLQCHLDW
HAPKKSEMSNFNQTYRKWFPEMRDWVNGPVGPQSSLEAAISLEEVAPYEEESEPMVPADE
SQCLCALCGEPFEDIFSESRDEWMYKGTVYLELQNKQDTTSNMDGPADQLPIVHAHCMSQ
WSARHC
NT seq
3441 nt
NT seq
+upstream
nt +downstream
nt
atggaaatggagagctcccgtagatccgccatggaccgttcccgagaaccgggcttgaag
cggcctcgattggcggcggaggacgcggcggagagggatcgcgctgccgtctccaccaaa
cgcgaccctcggctcagggccgtcggccagccgctggatcccagggttcccaggcctcct
cgggtgggggacagggaagggagcgacgatgcgccgagaggagggtcgcatcaagagctt
gtggcgcagtacaagacggcgcttgcggagctaacattcaattccaagcctatcatcact
aatctgactattatcgcgggagagagtcttcatgccgctagggaaattgctgccgtcgtc
tgcgccaacatcctcgaggtacccaatgaacaaaagttgccatccctgtatctcctagat
agtattgtgaagaatattggaagagattatatcaaatgttttgctgcaaggctacctgag
gtcttctgcaaggcttataaacaggttgattcttctattcattcgagtatgagacatctg
tttgggacatggagaggagtcttcccccctgcctcacttcagataattgaaaaagaactt
gacttcccaccaatcaccaatggttcatcgaaatctgaatcatcaaaacttgattcccaa
ccacagcgtccagcccacagcattcacgtgaatccaaagtacctggaggcaagacagcgg
cttcaacaatcatctagggccaaggacataagcagtgatgatttcagtggtgtggttagt
acaattgatgatgcaaagaggtatgacagaatcactacggtaggaaattcaaggcaatgg
aaaaatctacctgctaaaatgcctttctatttgcagaatgtgcaatgtcctcaacaggaa
ttcattaacaatgtcatccatgataaaaaaaggcttaaagttattagagatcatgaatat
tcttctgatctttcacaagagttggaccttggaattggaagagttggtgagaggcttaaa
gacggagatgggcacaacaatgctggtaccaattttactgaagcacagcttaacagaatg
aatgaatttgatgtaaatcatttttatgataattatcaagtctctggatctagacgatct
aatactctgctaagttcagtagatttaggtgatagagatagaagcaagttagaagcatct
agaagctggaagaactctgaggaggaagagtatatgtgggatgacatgaaaacaggaaca
gagtatggaggtaccaacaactcactcaaaggtgattggcataatgccgatgctgatagg
tctgttagaatgcaaagtggaaagtggatgtctttgaagccagagcatgtgcaatgcaac
ttgaacaaagtcaatgatgctttccctcgattagtgaagactaataagggtgaaagcaaa
gtgctgccttatgaggctaatgatattctcaacaagcaggatttttttgagaagcttcga
ccatcatctgctgtttatgacactaatttgggattacgtacagaggcttcttcaaattca
ctatcacaacggaaggcttcatcagaacaccattcctcatctttctggacctcccatgag
ttaccagcatctttggttggattagataaaaattgctcaagggctggtcaaccagaagga
caatcgctctctttcagtgctggtttatctacaagcatttgttcatctttgccactgcct
gggctgtgttcttctgtgccgtcttcaactttgggccttcatgctaatatcccagggtca
agcggaacttttggacagcagtggcagcaaactttgcagcttccatcactgtcttcagat
ttaactccatcttcaacatccattcaacaacggaaaccacataactcaattgatcctgat
tgtcttcgatctcatttgttctctcaaactggtcataagcctttgcatctagcaggttcc
gtggattttgtttcaggtaaaagtcatgctcaaccacttggtgcatcccaatcagagatt
actcagcaccttgaagacttatttgatcctactacctcaacatcctataatcagccaagg
gatcgtccccctctcatacagcaatcacaatataatctatctcaatggcaggcagcaaca
cagtctcagccttctcgaactgaaaccgagactcaaccttcccttcggagtgaaacagag
tctcaaccttcctatcagactgagaaactgtcacctctgcccccgggtcttggaactcat
caggctgaaaaagattcttgcacaagccactcaaatgatcctgctgtaagacagcctcac
acaagtagtttattggctgcaattatgaaaagtggtggtctgttaccgaataattcaatc
agcaaccttcaaaagccaagtgtacagcctcctttgcctgttggacctcctcctatccaa
gttacatcagctgctccttcaaacactccatcggttttccctccactttcccttgatgat
acacctgatctgaagccaccccaatttggagacacgataccacccctaccacctggccct
cctccaccttcctcatcctcggtagctgtgaactcagacaactcgaagacgtctggagcc
aatgtgaattcactttcaagtcttctgagttcattagttgcaaaaggtttgatatcctca
tcatcaactgagttgccaactacatctacagctaagctggttgataaggccaaggatcag
tgtattggctttcctagcaacagtatggagcaagttccttcattcttaactacctcatca
ggcattcctccaatttctacagaagatcctgctacatcaaactcagttgcaggtgctgca
ttatcacaatccagtgctgctgagttgaagaaccttgtaggctttgagttcaaatcagaa
attatgcgtcgatttcatcctttggtgcttacaagcctattcgatgatctaaaacatcaa
tgcaacatatgtggtctgaggttcagacttcaagagcagctccaatgtcatctagattgg
catgcgccaaagaagtctgaaatgagcaactttaaccaaacgtatagaaaatggttccca
gagatgagagattgggtcaatggtcctgttggaccacaaagttctttggaggcagcaata
tcgctggaggaagttgccccatatgaagaggaatctgaacccatggttcccgcagacgag
agccaatgtttgtgtgcattatgtggagaaccatttgaagatattttctctgaatcaaga
gatgaatggatgtacaaggggactgtatacttggaactacaaaataagcaagatactaca
agtaatatggatggaccagctgaccaacttcctattgtgcatgctcattgtatgtcgcag
tggtccgccagacattgctga
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