Musa acuminata (dessert banana): 135585974
Help
Entry
135585974 CDS
T03447
Name
(RefSeq) uncharacterized protein LOC135585974 isoform X1
KO
K12830
splicing factor 3B subunit 3
Organism
mus
Musa acuminata (dessert banana)
Pathway
mus03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mus00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135585974
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mus03021
]
135585974
03041 Spliceosome [BR:
mus03041
]
135585974
03036 Chromosome and associated proteins [BR:
mus03036
]
135585974
Transcription machinery [BR:
mus03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
135585974
Spliceosome [BR:
mus03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
135585974
Complex B
135585974
Complex C
U2 SnRNP specific factors
135585974
Chromosome and associated proteins [BR:
mus03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
135585974
TFTC complex
135585974
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
CPSF_A
Beta-prop_RSE1_2nd
Motif
Other DBs
NCBI-GeneID:
135585974
NCBI-ProteinID:
XP_064981329
LinkDB
All DBs
Position
BXJ2-9:complement(7481707..7504190)
Genome browser
AA seq
1388 aa
AA seq
DB search
MGEDESAARGGHFGSAARGSRGVHYLAKCVLRGSAILHAVQGHIRSPYSSDIVFGKETSL
ELASINEDGIVQSIFEQSLFGAIKDLAILPWNNRFQEHAHQAQGKDLLVVLSDSGKLSFL
TFCSTMHRFFAVTHIELSKPGNVVHQLGRMLAVDPRGCFVAVSAYEDRFALFDVSMISDS
NIGYEKISYPSENKTEGSSGQDTLGTSIRGTIWSMCFISDGTYQIEGYHSILAIVMHRKG
SFINELLLFGYNRHAHAIQVISWYSETGPLAINISAIPHFPGFAILFRIGEMLLMDLRDP
QNICCLHKINLNIPSLVEDRSFVEESCRALDDDEGMFNVAACALLELRDSGPDMFKIDDP
MSIDSGGGKGSSSSKLVCSWTWRPGNSMDPKLIFCLDTGELYMVEIYSHTEGININLSEC
LYRGSPCKALLWVKCGLIAGLVEMGDGFVLKLEHAKLFYKSSIQNIAPILDVSIADYHDE
KQDQMFACCGMNPEGSLRIIRSGISVERLLRTAPIYQGVTGTWTLRMKQSDPYHSFLVLS
FVEETRILSVGLSFNDVTDAVGFQSDVCTLACGLFADGVLVQIHRSGIRLCLPTTSAHPG
GVPLSLPICASWSPGSRTISVGAVGQNLVIIATSNPCFLSIIGVRSLSTYNFEVYEIQHV
RLQYEVSCISIPLKNTNNKHIASEARLANKDHEVSHFDNFDINMAFVIGTHKPSVEVLSF
ANEEAFRVLATGTIAVNNALGSPISGCIPEDVRLVSVDHPYVLAGLRNGMLLRFEWPAIP
EFLQSDLSRQSCFPRSCFSDYESSSSIVANLNSYNSVTEQAKNCIPIFLQLIAIRRIGIT
PAVLVPLKDSLDADIIVLSDRPWVLHAARHSLAYTSISFQPATHVTPVCSVDCPKGVLFV
AENSLHLVEMVHCKRLNVQKFSIDGTPRKVLYHSESKTLLVLRTGLGGGSCSSDVCRVDP
FSGTLLSKFQCEPGETAKCMQIVKVGKEQVLVVGTSQSVGRIIMPSGEAESTKGRLIVLS
LDSAQNYSEGSPLIYCSNMDVSSQAGSPFGEIVGYSAEQLSSSSHCSSQGDPCSDGIHLD
EIGAGQLRLVSQATSSGAVLAVCPYLDQYVLASAGNTLNVFGFANENPQRLRKFAVGRTR
FTITCLRTHLTRIAVGDCRDGILFYSYHEDVRKLELLYSDPVQRLVADCALMDCDTAVVS
DRRGNISVLSCPSSLEVSEYPEKNLVLNCSFYMGETVMSIQKASISCKLPVDNVLNGSDG
VERVLESSYNSVVASTLLGSVFVLIPITSEEHALLESVQARLAVHWLTCPVLGNEHKEYR
GRGLPAGVPTILDGDMLMQFLELTSLQQESVLASPGSSTHASASDFHQSPLSVNMVVQLL
ERIHYALN
NT seq
4167 nt
NT seq
+upstream
nt +downstream
nt
atgggagaggatgaatcggccgcgcgcgggggccacttcggttcggcggccaggggtagc
cgcggcgtccactacctcgctaagtgcgtccttcgcggaagcgccatcctccacgccgtc
cagggacacatacgctcgccgtattcctcggacatcgtgttcgggaaggaaacatcactg
gagttggcatctatcaatgaagatggcattgtacaatcaatatttgaacaaagccttttt
ggtgcaataaaggaccttgccatcctaccatggaacaacagattccaagaacatgcacat
caggcacagggaaaagacttgttagttgttctttccgattcaggaaaactttcatttctt
accttttgttctaccatgcacaggttctttgctgtgacacatattgaattatccaaacca
gggaatgtggtacatcaattaggaagaatgttggctgttgatcctagaggctgttttgtt
gctgttagtgcatatgaagatcgatttgcactatttgatgtgtctatgatttctgatagc
aacattggttatgagaaaatttcctatccatcggaaaacaaaacagaaggaagcagtggt
caggatacattgggtaccagcatccgtggtacaatttggagcatgtgcttcatttcagat
ggtacttatcagatagaaggatatcattccattttggcaattgtaatgcacaggaaaggc
tcgttcataaatgagttgctgttatttgggtataatcgccatgcacatgctatacaagtt
atatcctggtattctgaaacagggcctttagcaattaatatatctgccattcctcatttt
cctggctttgcaattctttttagaataggagaaatgcttttaatggatctcagagaccca
cagaatatctgttgtcttcacaagataaatttgaacataccaagtttggttgaagatcga
agctttgttgaagagtcatgtagggcattagatgatgacgaaggcatgttcaatgtagct
gcttgtgctttgttggaattacgagattctggtccagatatgtttaagattgatgatcct
atgagcattgatagtggaggcgggaaaggatcttcaagttccaagcttgtatgctcatgg
acttggagacctggtaattccatggatcctaagttaatattttgtttggacactggggaa
ctatacatggttgagatttattctcacactgaaggaataaacattaatttgtcggagtgt
ctctacaggggttcgccatgcaaagcactcttatgggtcaagtgtggattaattgcaggc
ttagtggagatgggagatggatttgtccttaagttggaacacgctaaattattttacaaa
agttctattcaaaacattgctccaattttggatgtgtctattgctgattaccatgatgag
aaacaagaccaaatgtttgcttgctgtggaatgaatccggagggttcactacgaattatt
cgaagtggtataagtgtagaaaggcttttaaggactgccccaatttatcaaggagtaact
ggtacatggactctgaggatgaaacaaagtgatccttatcactcctttcttgtgttatct
tttgttgaagaaactaggattttgtccgttggtttaagctttaacgatgtaactgatgca
gttgggtttcagtctgatgtctgcactttggcctgtggtttgtttgctgatggggtgctt
gtgcagattcacaggagtggtataaggctctgtttacctaccacgtctgctcatccaggg
ggtgtccctctttctctaccaatatgtgcttcttggtctcctggtagtaggacaattagt
gttggtgcagttggtcaaaatttggtaattatagctacttctaatccttgctttttatct
attattggtgtgagatcactctcaacttataattttgaagtatatgaaattcaacatgtg
agactgcagtatgaggtttcatgcatttctataccattgaaaaataccaataacaaacat
atagcttcagaagctagactagctaataaggatcatgaagttagtcactttgataatttt
gatattaatatggcttttgtcattggcactcataaaccatcagttgaagttctctcattt
gcaaatgaagaagcttttagagtgcttgctacaggaactattgcagtaaataatgctctt
ggtagccctatcagtggatgtattcccgaagatgttaggcttgtatcagttgatcaccct
tatgttcttgcgggcctgagaaatggaatgctacttcgttttgagtggcctgcaatacct
gaattcctccagtcagatctgagcaggcaaagttgtttccctaggtcttgttttagtgac
tatgaaagttcctcatcaattgtggcaaatttgaattcttacaatagtgtaacagaacag
gctaaaaactgtattcccatattcctgcaattgattgccattcgacgcattgggattact
cctgctgttttggtacccttgaaagattcacttgatgctgacataattgttcttagtgat
aggccatgggtattacatgcagcaagacacagccttgcatacacatccatttcattccaa
cctgcgactcatgtcactcccgtctgttctgtcgactgccctaagggagttctgtttgtt
gcagaaaacagcctacatctggttgagatggtacattgcaagagacttaatgtacagaag
ttctctattgatggcactccgaggaaagttttatatcatagtgaaagtaaaacattgctg
gtgttgagaactggattaggtggtggatcatgttcatcagacgtatgccgagtagatcct
tttagtggaacattgctttcaaagtttcaatgtgaacctggggaaacagcaaaatgtatg
caaatagtgaaggtaggaaaggagcaagtcctggttgttggaaccagtcagtctgttggc
aggattataatgcccagtggtgaagctgagagtacaaagggacgcttgattgtgctgagc
ttggactccgcacaaaattattcagagggaagtccattgatttactgctctaatatggat
gtatcctcccaagctggttccccgttcggggaaattgttgggtattctgctgaacagttg
tctagcagtagtcattgcagcagccaaggtgatccttgcagtgatggaattcatcttgac
gaaattggggcagggcaattgcgattagtttctcaagccacatcatctggtgctgtactg
gcagtctgtccttatctagatcaatatgtcttggcttctgctggtaatactcttaatgtt
tttggctttgcaaacgagaatcctcaacgtctgagaaagtttgccgtaggcagaacacgc
tttaccattacttgtttgaggacacatctcactagaatagctgttggtgattgtcgtgat
ggcatccttttttattcttatcatgaggatgttagaaaattggagcttttgtattctgat
cctgttcagaggttggttgctgattgtgctctgatggattgtgataccgctgttgtgtca
gatcgtagaggcaacatttctgtactgtcatgtcccagttctttggaagtcagtgaatac
ccagagaagaacttggtgctaaattgttcattttacatgggagaaactgttatgagcatc
cagaaggcttcaatttcatgtaaacttccggtagataatgttctcaatggttctgatggt
gtggaaagagttctagaatcttcctacaacagtgttgttgcaagcacattgctaggaagt
gtcttcgtcctcattcctattacaagcgaagaacatgcattgctagaatctgtgcaagct
agacttgcagttcattggctgacttgtccagtactaggaaatgagcacaaggaatatcgt
gggcgtggactgccggcaggagtgcctaccatacttgatggggacatgcttatgcagttc
ttggagctaacaagtttgcagcaagaatctgtgcttgcttcacctggatcaagtacgcat
gcatcagcttcagactttcaccaatcacctctgtctgtcaacatggttgttcagcttctt
gaacgtattcattatgcccttaactaa
DBGET
integrated database retrieval system
