Musa acuminata (dessert banana): 135598401
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Entry
135598401 CDS
T03447
Name
(RefSeq) probable U6 snRNA-associated Sm-like protein LSm4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
mus
Musa acuminata (dessert banana)
Pathway
mus03018
RNA degradation
mus03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mus00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135598401
09123 Folding, sorting and degradation
03018 RNA degradation
135598401
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mus03019
]
135598401
03041 Spliceosome [BR:
mus03041
]
135598401
Messenger RNA biogenesis [BR:
mus03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
135598401
mRNA degradation factors
5'-3' decay
Lsm complex
135598401
Spliceosome [BR:
mus03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
135598401
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
135598401
NCBI-ProteinID:
XP_064948199
LinkDB
All DBs
Position
BXJ2-1:2354503..2360406
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AA seq
148 aa
AA seq
DB search
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEETSKSRTDRKPPGVGRGRGRGRDDTSGRPAKGIGRGQDD
GSSKGGGRGRGGAGGKGGGVRGGGRGRG
NT seq
447 nt
NT seq
+upstream
nt +downstream
nt
atgcttccgctatcacttctcaagacagcacaagggcatcctatgctggtggagttgaag
aacggggagacttacaatggtcacttggtgaactgcgatacctggatgaatatacacctc
cgtgaggttatttgtacctcaaaggatggtgatcgcttttggaggatgcctgagtgttat
attcgtgggaataccattaagtatcttcgagttccagacgaggtgattgataaggtacaa
gaagaaaccagcaagagtcgcactgataggaagccacctggtgttggtcgcggaagggga
agaggtagagacgacaccagtgggaggcctgccaaaggcattggacgtggtcaagatgat
ggaagcagcaagggcggtggtcgtggaaggggtggagctggtggtaaaggtggtggtgtc
agaggtggagggcgtgggcgtggctga
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