Musa acuminata (dessert banana): 135598493
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Entry
135598493 CDS
T03447
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2-like
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
mus
Musa acuminata (dessert banana)
Pathway
mus03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mus00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
135598493
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mus03019
]
135598493
Messenger RNA biogenesis [BR:
mus03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
135598493
U7-dependent histone pre-mRNA processing factors
135598493
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Lactamase_B_2
Motif
Other DBs
NCBI-GeneID:
135598493
NCBI-ProteinID:
XP_064948415
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Position
BXJ2-1:complement(3869239..3886106)
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AA seq
735 aa
AA seq
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MGTSVQVTPLCGVYSENPLCYLLSIDGFNFLMDCGWNDHFDPNLLQPLSRVSTKVDAVLL
SHPDVLHLGALPYAMKHLGLTSPVYSTEPVYRLGLLTMYDHYLSRRQISDFDLFTLDDID
TAFQNVTRLTYSQSCHLSDKGEGIVIAPHVTGHLLGGTVWKITKDGEDVVYAVDFNHRKE
RHLNGTVLESFVRPAVLITDAYNALNNQLYKRQRDQEFIEAILKALRADGNVLLPVETAG
RALELILILEHYWAQQHLSFPIFFLTNVATSTIDYVKSFLEWMSDSIAKSFEHTRDNAFL
LKHVNLIINKSELEKIAEVPKVVLASMASLEVGFSHDIFVEWATEAKNLVLFTEKGQFGT
LARMLQVDPPPKAVKVTLSKRVPLVGDELKAYEEEQNRIKKEEALKVTLSKEEELRASHG
SDANVADPMVIDVSSSHISSASGSRSSGHLDIFIDGFIPPATSVAPMFPFFETKAEWDDY
GEVINPDDYIMKEEDQDQTLMQGDLDGKLEEGSAHLLLDSAPSKVISNEITVQVKCGLTY
MDFEGRSDGRSVKSIISHVAPLKLVLVHGSAEATEHLKQHCIKHVCPHVYAPHIEETIDV
TSDLCAYKVQLSERLMSNVLLKKLGDYEIAWVDAEVGKTNDMLTLLPLSSAPPTHKSVLI
GDLKLADFKQFLASQGVQVEFTGGALRCGEHVTLRKISDASQKGGTGGQQILIEGPLTEE
YYKIRKHLYSQFYLL
NT seq
2208 nt
NT seq
+upstream
nt +downstream
nt
atgggtacttcggttcaggtgacgcctctctgcggggtctacagcgagaacccgttgtgc
tacttgctctccatcgatgggttcaacttcctaatggactgcggatggaacgaccacttc
gatccaaacctcctccaacccctctccagggtatcaacaaaagtagatgctgtcttactt
tcacatccggatgttcttcatctaggtgctttgccatatgccatgaagcatcttgggtta
acttctccagtttattcaacagagcctgtatatagacttggtcttttgaccatgtacgat
cactacctttcccgaagacaaatctcggattttgacttgttcacgctggatgacattgat
actgccttccaaaatgttactaggctcacatactcccagagttgtcatctttctgataaa
ggagagggtattgttattgctccccatgtgacgggacatcttctgggaggtacagtctgg
aagataacaaaggatggggaggatgtggtctatgctgttgactttaatcatcggaaagag
cgtcacttgaacggcactgttctggagtcttttgtgcggccagctgttctgataacagat
gcttataatgctttgaacaatcagctctacaaacgtcaaagggatcaagagttcattgag
gcaatactaaaggccctgagggcagatggaaatgtactgcttccagttgagaccgcagga
agagcactggaacttattttgatattggaacattattgggcacagcagcatttaagtttt
cctattttctttctgacaaatgtggccacgagtacaattgactatgtgaagagtttcctt
gagtggatgagtgattctattgcaaaatcattcgaacatactcgtgataatgccttctta
ttgaagcatgtcaaccttataatcaataagagtgagcttgagaaaattgctgaggttcca
aaggttgttctagcatcgatggccagtttggaggtaggtttctcacatgacatatttgtt
gaatgggcaactgaagcaaagaacctggtgcttttcactgaaaaaggccagtttggcaca
cttgctcgcatgctacaagttgatccacctcccaaagccgtaaaggttactttgagcaag
agggttcctttagttggtgatgagttaaaagcttatgaagaagagcaaaatcgaataaaa
aaagaagaagccttgaaagttactctcagcaaagaggaggaactaagggcatctcatgga
tcagatgctaatgtagctgatccaatggtgattgatgttagctcatcacatatttccagt
gcctctggttcacgttccagtgggcatctggacattttcattgatggatttatccctccg
gctacaagtgttgccccaatgtttccattcttcgagacaaaagctgaatgggatgactat
ggtgaggttatcaatcctgatgactacataatgaaggaagaagaccaggatcaaacatta
atgcagggagatctcgatggtaaactcgaggaaggctcagcacatctactccttgattca
gctccttctaaagtcatttcaaatgaaataacggtgcaagttaagtgtggattgacttat
atggattttgaaggtcggtctgatggacgctctgttaaatcaatcatatctcatgtggct
cccttgaaacttgttttagtacatggatcagcagaagccactgagcatttgaaacaacac
tgcataaaacatgtttgcccccatgtttatgctccgcatattgaagaaacaattgatgtt
acctctgatttgtgtgcttataaggtgcagctttcagagaggctaatgagtaatgttctt
cttaagaagctgggtgactatgagattgcatgggttgatgctgaagttggaaagaccaat
gacatgctcactctccttccactttcttcagctcctccaacccacaaatctgttctcata
ggagacctgaaactggcagatttcaagcagttccttgctagccaaggtgtccaggtagaa
ttcactgggggtgcccttcgctgcggcgagcatgtaactctgcgcaagataagtgatgcc
agccagaagggtgggactggtggtcagcaaattctcatagaaggcccattgacagaagag
tactacaagatacgcaagcatctttattcccagttctacttgctgtaa
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