Musa acuminata (dessert banana): 135606038
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Entry
135606038 CDS
T03447
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9-like isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
mus
Musa acuminata (dessert banana)
Pathway
mus03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mus00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
135606038
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mus03019
]
135606038
03041 Spliceosome [BR:
mus03041
]
135606038
03009 Ribosome biogenesis [BR:
mus03009
]
135606038
03016 Transfer RNA biogenesis [BR:
mus03016
]
135606038
Enzymes [BR:
mus01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
135606038
Messenger RNA biogenesis [BR:
mus03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
135606038
Spliceosome [BR:
mus03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
135606038
Complex C
U4/U6.U5 tri-SnRNP related factors
135606038
Ribosome biogenesis [BR:
mus03009
]
Eukaryotic type
Pre-60S particles
Helicases
135606038
Transfer RNA biogenesis [BR:
mus03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
135606038
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
Motif
Other DBs
NCBI-GeneID:
135606038
NCBI-ProteinID:
XP_064952831
LinkDB
All DBs
Position
BXJ2-2:complement(31258426..31269997)
Genome browser
AA seq
986 aa
AA seq
DB search
MSSLKRKALEDSNPEFVPPSKSPREAAVVRLDEPVACLHDVSYPDGYAAPTRPRPASENS
KTPAREFPFELDPFQLEAIKCLDSGESVMVSAHTSAGKTVVALYAIAMSLRDQQRVIYTS
PIKALSNQKYREFKEEFSDVGLMTGDVTIEPNASCLVMTTEIWRSMQYKGSEIMREVAWV
IFDEVHYMRDRERGVVWEESIVMAPKNSRFVFLSATVPNAKEFADWVAKVHRKPCHIVYT
DYRPTPLQHYIFPSGGNGLYLVVDEKGKFREDSFQKALNALVPAEENKRDNGKWQKALLA
GKPREESDIFKMVKMIIQRQYDPVILFSFSKRECEFLAMQMAKLDLNEEDEKVNIETIFW
SAMDILSDDDKKLPQVSNMLPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETF
SIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDQRGICILMVDEKMEP
STAKLMVKGNADSLNSAFHLSYNMLLNQIRCEDGDPEKLLRNSFYQFQSDQSLPDLEKQL
KELKMERDSMVIEEEESLKDYYNLLQQYRSLKNDVRDIVFSPKYCLPFLQPGRLARIRIV
GDDKMPSFSGEEQVTWGVIISFERVKGSAEDRRPEDANYTCDVLTRCFVNKEGMKKTTKI
VPLNERGEPVVVSLPLSQVDSLSSIRLFIPKDLLPLEARENTLKKVSEVLLRFAKDGIPL
LDPEEDMKVQSNSYRKAIRRIEAIESLFRKHEIRNSPLIEQKLKVFHSKQDLTARIKSIR
KALQTSTALAFKDELKARKRVLRRLGYITSEDVVELKGKVACEISSADELTLTELMFSGI
LKDANLEEMVALLSCFVWQEKLQDAPKPREGLDLLYSQLQEIARRVANVQLECKIQIDVE
NFVNAFRPDIMEAVYSWAKGSKFYQIMEVAQVFEGSLIRAIKRLEEVLQQLILAAKSIGE
IELESKFEEAVTKIKRDIVFAASLYL
NT seq
2961 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcactgaagagaaaagcccttgaggattccaatccggagttcgtgccaccctcc
aaatcacccagggaagcggcggtggtccgcctcgacgagccggtggcgtgcctccatgac
gtctcctaccccgatggctacgcggccccgacgcggccccgccctgcctccgagaattcg
aagactccggctagagagttccctttcgagctcgaccccttccagttggaagccatcaag
tgcctggacagtggtgaatccgtcatggtctcggcacatacatcagcagggaagacagtc
gttgcattgtatgcaattgccatgtctttgcgagatcagcaacgcgtcatctatacctca
cccatcaaggctctcagcaaccaaaagtacagggaatttaaagaagagttttcagatgtt
ggtctcatgactggggatgtaaccatagaacctaatgcctcttgcttggttatgaccact
gaaatttggcgtagtatgcagtataaaggatcagaaattatgcgggaggtggcttgggtt
atttttgatgaagtccactacatgcgtgatagagagcgaggtgtagtatgggaagaaagc
attgttatggctcctaagaactcacgttttgtgtttctctctgctacggttcctaatgct
aaggagtttgcagattgggttgcaaaggttcatcgaaaaccgtgccatatagtttataca
gattatcgacctacaccacttcagcactacatttttccttctgggggcaatggcctatat
ttggtagtggatgagaagggaaagtttagagaggacagttttcagaaagctttgaatgcc
cttgttccagctgaggagaacaaacgtgataatggaaaatggcagaaggctttattagct
ggtaagcctcgtgaggaaagtgacatatttaagatggtgaagatgataattcagcgccaa
tatgatcctgttatacttttcagctttagcaaaagggaatgtgagtttcttgcaatgcag
atggcaaagttggacttaaatgaagaagatgaaaaagtgaatatcgaaacaatattttgg
agtgccatggatatactttctgatgatgacaagaagttacctcaggtatcaaatatgctg
cccttgttaaaacgtggaattggtgtacatcattctggtctacttccaattctgaaagaa
gtgattgaaatactttttcaagagggtctcatcaagtgtttatttgcaacagaaaccttc
agcattggtttgaacatgcctgcaaagactgtagtatttacaaatgtacgcaaatttgat
ggtgataaatttcgatggatatcaagtggtgagtatattcaaatgagtggacgtgctggc
cgtcgaggcatagatcagcgtggcatctgtattttaatggtggatgaaaaaatggagcca
tccactgctaaattaatggttaaaggaaatgctgatagtttaaacagtgccttccactta
agctacaacatgctgttgaatcaaataagatgtgaagatggtgacccggaaaaacttctt
cgaaattcattctaccaatttcaatctgatcaatctcttcctgatcttgagaaacaatta
aaggaattaaaaatggagagagattctatggttattgaagaggaggagagcttgaaggac
tattataatctattacagcagtaccgaagcttaaagaacgatgttcgtgatattgtattc
tccccgaagtactgtttgccgttcttgcagcctggccggcttgctagaatccgtatagtt
ggtgatgacaagatgccatctttctccggcgaggaacaggttacgtggggagtaataatt
agctttgagagggtaaaaggctcagctgaagatagaagacctgaggatgctaattacaca
tgtgatgtcctcacaagatgtttcgtgaataaggaaggaatgaagaaaacaacgaagatt
gttcctttaaatgaacgcggagaacctgttgttgtttcgttgcctctctctcaggttgat
agtttaagcagtatccgtcttttcattccaaaggatctcttgccactagaagctcgggag
aatactctgaagaaggtttcagaagttcttttaagatttgccaaagatgggatacctctt
ttagatcctgaggaggatatgaaagtacaatcaaattcgtatagaaaagctattagaagg
attgaggctatcgaaagcttattccgcaagcatgaaatcagaaactcaccgcttattgaa
caaaaactgaaggtttttcattctaagcaagatttgacagccagaatcaagtcgataagg
aaagcattgcaaacttcaacagcacttgccttcaaagacgagcttaaagcaaggaaacgg
gttctccgtagactgggatatattaccagtgaggatgttgtggagctgaagggcaaggta
gcctgtgagataagcagtgctgatgaactaacactaactgaacttatgtttagcgggata
ctgaaagatgccaatttggaggagatggtagccctgctttcatgttttgtctggcaggag
aagctgcaagatgcccctaagccaagggaagggcttgacctgctttattctcagctgcaa
gaaatagcaagaagggttgccaatgttcaacttgaatgcaagatccaaatcgacgtcgag
aattttgtcaacgcttttcgtccagacatcatggaagctgtctattcatgggccaaagga
tcgaaattttatcagatcatggaagtagctcaagttttcgaaggtagcttaatcagggct
attaaaaggctggaggaagttctgcaacagctaattctggcagcaaaatctatcggagaa
attgaactagaatccaaattcgaagaggctgttacaaaaattaagcgagacattgtgttt
gctgcatctctatatttgtag
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