Musa acuminata (dessert banana): 135606700
Help
Entry
135606700 CDS
T03447
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
mus
Musa acuminata (dessert banana)
Pathway
mus03020
RNA polymerase
mus03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mus00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
135606700
09124 Replication and repair
03420 Nucleotide excision repair
135606700
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mus03021
]
135606700
03400 DNA repair and recombination proteins [BR:
mus03400
]
135606700
Enzymes [BR:
mus01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
135606700
Transcription machinery [BR:
mus03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
135606700
DNA repair and recombination proteins [BR:
mus03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
135606700
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
135606700
NCBI-ProteinID:
XP_064953889
LinkDB
All DBs
Position
BXJ2-3:complement(455394..462815)
Genome browser
AA seq
1790 aa
AA seq
DB search
MDIRFPYSPANVAKVGAVQFGILSPEEIRHMSVVQIVHGATTERGKPKLGGLSDPRLGTV
NRMMSCETCKGNMAECPGHFGHLELAKPMFHIGFLETVLLITRCVCFNCSKILVDEDDPK
FKEALKIRNPKNRLQRIYVACKSKKKCSGGDDIGLRGQQDSQGPTEKSRVGCGARQPIIT
IDGLKMVAEYKDSKKKSDEQEDRLEPSERKQVLSAETVLSVLERISDEDCLLLGLDPKYA
RPDWMILQVLPVPPPPVRPSVMMDSSLRSEDDLTHQLAMIIRHNENLRQQERSGAPAHFI
SELAQVLQFHVATYFDNELPGQPTATHRSGRPIKSICSRLKGKGGRIRGNLMGKRVNFSA
RTVITPDPTINIDELGVPWSIASNLTYPETVTAYNIERLRELVENGPHPPPGTPGANYII
RDDGQRLDLRYVKKSSDRHLELGYKVERHLRDGDYVLFNRQPSLHKMSIMGHRIKLMPYS
TFRLNLCVTTPYNADFDGDEMNMHVPQSLETRAEVIELMMVPKCIVSPQSNRPVMGIVQD
TLLGCRKITARDTFIEKDVFMNILMWWEDFDGKIPAPAVLKPRPLWTGKQVFNLIIPKQI
NLMKFSGWHAETETGFITPGDTVVRIEKGELLSGTLCRKTLGTSPGSLIHVIWEEVGPDA
ARKFLGHAQWLVNHWLLQNGFSMGIGDTIADAATMEKINVTISKAKNDVKELIKLAQEKQ
FEAEPGGTMMESFENRVNQVLNRARDDAGSSGQKSLSESNNLKAMVTAGSKGSFINISQM
TACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR
EGLVDTAVKTSETGYIQRRLVKAMEDIVVTYDGTVRNSLGDVIQFLYGEDGIDAVWIESQ
KLDSLRMRKTEFESVFRYQLDDVHWNPSYLQEEHVEDLKTIPECRDVFDAEVQKLEADRY
QLGTEIATTGDATMHMPVNLKRLIWNAQKTFKIDPRRPSDMHPMEIVDAVDKLQERLKVV
PGDDFLSMEAQRNATLLFGILLRSTLASKRVMKEYRLTREAFEWVIGEIESRFVQSLVSP
GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKQIKTPSLCVYL
KPEVRHEKEMAKQVQCALEYTTLRSVTHATEIWYDPDPRSTVIEEDVEFVRSYYEMPDED
TASENISAWLLRIELNREMMVDKKLAMADIAEKIDNEFGDDLRCIFNDDNADKLMLRIRI
TNDDAPKREVQDESDEDDVFMKKIESNMLTEMALRGIPEIKKVFIKSAKNSRFNDEEGFE
QAVEWMLDTEGVNLLAVMCHEDVDATRTTSNHLVEVIEVLGIEAVRRALLDELRAVISFD
GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVEILLDAAVYSEED
HLRGVTENIMLGQLTPVGTGACALYLNDQMLQQAIELPLPSYMTDGGGFDFGTTPSASPN
YAWASYHEGMMSPGYLLSPQIRASPLTTAAQFSPYVAGMAFSPSPSLDYSPSSPGYSPAS
PAYSPTSPAYSPTSPSYSPTSPRYSPASPSYSPTSPRYSPPSPSYSPSSPVYTPTSPSYS
PPSPSYSPSSPVYTPTSPSYNPPSPSYSPSSPVYTPTSPSYSPTSPSYTPSSPSYSPTSP
RYSPISPSYSPTSPKYGPSVACPPSSPRLFPSSQHGQSSPNYRSTSPSYSPASPSYSPSS
PAFSPDSPSNSGTGPEYSPSSPQYSPSAVYSPSSPAYSTSSSDEDEESTG
NT seq
5373 nt
NT seq
+upstream
nt +downstream
nt
atggacatacgattcccttactccccggccaacgtcgccaaggtcggcgccgtacagttc
gggatcctcagccccgaagaaattcggcatatgtcggtggtgcagatcgtgcatggcgcg
acgacggagcgggggaagcccaagctcggggggctaagcgacccgaggctcgggacggtg
aaccggatgatgagctgcgagacctgcaagggcaacatggcggagtgccccggccacttc
ggccacctcgagcttgccaagcccatgttccacatcgggttcctcgagacggtgctactt
atcacgcgctgcgtctgcttcaattgctccaagatcctcgttgatgaggatgatcccaag
ttcaaggaagccctgaaaattcggaacccgaaaaataggttgcagagaatatatgttgcc
tgtaaaagcaagaagaaatgctctggtggtgatgatatcggtctccggggtcaacaagat
tcacaaggaccaacagagaagagccgggtcgggtgtggtgcccggcagccaattataacc
atagatggcttgaagatggtcgctgaatataaagactcgaaaaagaaatcggatgaacaa
gaagaccgtctcgaaccatctgaacgaaaacaagtcctgtctgccgagacggttctcagc
gttctcgagaggataagcgatgaggattgtctgctcctaggtctcgatcctaaatatgcc
cgtccagattggatgatattgcaagtccttccggttcctccgcctcccgtgagaccttcc
gtgatgatggattcgtccttgaggagcgaggacgatttgactcatcagttggcaatgata
attaggcataatgagaatttgaggcagcaggaaaggagcggagctcctgctcacttcatc
tcggagcttgcccaagtgttgcaatttcacgtcgccacttactttgataatgagcttccg
ggtcagccaacagcgacgcatcggtcagggcgacccatcaaatctatttgcagtagactg
aagggtaaaggcggtcgaatcagaggtaatttgatgggaaagcgcgtcaacttttccgca
cgaacggtcatcacgccggacccgacgattaacatcgacgaactgggcgttccttggagc
atagcttcgaacctcacgtacccggaaactgtgaccgcatacaacatcgagagactgagg
gaactcgtggaaaacggtccgcatcctcctcctggaacgcccggcgcaaattacattata
cgggacgacggtcaaaggctcgatcttcgatacgtgaagaaaagcagcgatcgccatttg
gagctcggatacaaggttgaacgccatttacgtgacggcgactacgttctcttcaaccgg
cagccgagtctccacaagatgtccattatgggtcaccggataaaacttatgccttactcc
acttttcgcctgaatctttgtgtcaccacgccatataatgctgactttgatggagatgaa
atgaacatgcatgttccccagtctttggaaaccagagcagaagtcatagagctaatgatg
gttcccaagtgtatcgtctcgcctcaatcgaatcgccctgttatgggtatcgtccaggat
accctcctcggatgtcgcaagatcacggcgagggacaccttcatagaaaaggatgtcttc
atgaacatcttgatgtggtgggaagacttcgatggaaagatacccgctcctgccgtactg
aaaccaaggccgctgtggacggggaagcaagttttcaaccttatcatcccgaagcaaata
aatctgatgaaattttcaggatggcacgcagaaacagagaccggtttcatcactccagga
gataccgtcgttaggatcgagaagggggagcttctctcgggcaccctttgcaggaaaaca
ctaggaacatctcccggaagcctcattcacgtcatctgggaagaagttgggccggatgca
gctcgcaagtttctggggcacgcgcagtggctcgtgaaccattggctgctgcagaatggc
tttagtatgggaatcggagacacgattgccgacgcggcaaccatggagaagatcaatgta
acgatatcaaaagctaaaaatgatgtcaaagaactcatcaagcttgcgcaggaaaagcaa
ttcgaagctgagcccgggggaacaatgatggagtcattcgagaatagagtcaaccaggtt
ctgaacagggcccgtgatgatgccggcagtagcggccagaagagcttatccgagagcaac
aacctgaaggccatggttaccgcaggttcgaaaggtagctttatcaacatctcacagatg
accgcctgcgtggggcagcagaatgtcgagggcaaacgaattccatttgggttcgtggat
cgaacgttgcctcactttactaaagatgactatgggcctgaaagccgcggtttcgtggag
aactcttaccttcgcggtttgacaccacaggaattcttcttccatgccatgggaggtagg
gaaggtctggtcgataccgccgtcaagacttccgagaccggctacattcagcgtcgtctt
gtgaaggcgatggaggatatagtggttacgtacgatggtaccgtgaggaattctctaggg
gatgtcattcagttcttatacggagaagatggtatagatgctgtttggatcgagtcacag
aagttggattcgttgaggatgagaaagacagaattcgagagcgttttcaggtaccagctg
gatgatgtccactggaatcctagctacctgcaggaggagcatgttgaggatctgaaaacc
atccccgaatgcagagatgtgttcgatgctgaggttcagaaattagaggcagatcggtac
caacttggcactgagatcgccaccaccggcgatgccacgatgcatatgcccgtgaatcta
aaaagactcatctggaatgcacaaaagacattcaagatcgatccgagaaggccatctgat
atgcacccgatggagatcgtggacgctgtcgacaagttgcaagaacggctgaaagtcgtt
cccggcgatgattttttgagcatggaggctcagaggaatgcgactttactcttcggtatc
ttactgcgtagcacgttagccagcaaacgtgtgatgaaggagtacaggcttactcgtgag
gcattcgaatgggtcatcggcgagatagaatcccggtttgtgcagtcactagtatcgccc
ggcgagatgatcggttgtgtagccgcccaatccatcggagagccagcgacgcagatgacc
ctcaacactttccactatgctggagtgagcgccaagaacgtcactctcggtgttcccagg
ttgagggagatcattaatgtcgccaagcaaatcaaaaccccttctctttgtgtgtacttg
aagcccgaggtcaggcacgagaaagagatggctaagcaggtgcaatgtgcactggaatac
accacattgcgcagcgttacgcacgcaaccgagatatggtatgatcccgatcctaggagc
accgtcatcgaggaagacgtcgagttcgtcaggtcatattatgaaatgccggatgaggac
actgcttccgaaaacatatctgcatggctgcttcgtatcgaactgaatcgtgagatgatg
gtggataaaaagttggccatggcggacatcgcagagaagatcgataacgaattcggtgat
gatttaaggtgcatctttaatgatgataatgcagataagctcatgctccgcatccgcatc
acgaacgatgatgcacccaaacgagaagtgcaggatgaatcggatgaggatgacgtattc
atgaaaaagatcgagagcaacatgctgaccgaaatggcactccgcggcatccctgaaatc
aaaaaggtttttatcaagtcagcaaaaaacagtaggtttaatgacgaggaaggcttcgaa
caagctgtggagtggatgctggacacggaaggcgtcaatctcttggccgtcatgtgccac
gaagacgtcgatgcaacgaggaccaccagcaatcacttggtcgaagttatagaggttctg
ggcatcgaggctgtccgacgagctctcttggatgagttgcgtgcggtcatatcgttcgac
ggatcttatgtgaactaccgccacttggctattctttgtgacacgatgacctacagaggc
cacctaatggccatcacccggcatggtatcaataggaacgacaccgggcctctgatgaga
tgttcgttcgaggaaaccgtggagatcctcctcgacgccgctgtgtactctgaagaagac
caccttagaggagtcacggagaacatcatgctcggacagctcacgccggtcggaactggg
gcctgtgcactgtacttgaatgatcagatgttgcaacaggcgatcgagcttccgcttccg
agttacatgacggacggtggtggatttgatttcggaacgacaccatctgcttcacccaat
tatgcttgggcatcttatcacgagggaatgatgtccccgggttacttgctgagtccacag
atccgtgcttcacccctcacgacggctgctcagttttctccttatgttgctgggatggct
ttctcccccagtccgtccttggattatagcccatcatctccgggttatagccctgcatct
ccggcatatagtcctaccagtcctgcttactctcccacaagtccatcatattcgccaaca
tctccccgttacagccccgcctctcccagttacagccctacatctccccgctacagtcct
ccttcaccgagttacagccctagctctccagtttacactccaacatcacctagctacagt
cctccttcgccgagttacagccctagctctccagtttacactccaacatcacctagctac
aatcctccttcaccgagttacagtcctagctctccagtttacactccaacatcacctagc
tacagtcctacatcaccttcctacactccaagctctccatcatacagtcctacatctccc
agatacagccccatatctccaagttacagtcctacctcaccaaagtatggtccttcggtt
gcatgtcctccgagcagtccaaggctgtttccgtccagtcaacatgggcaatcatctcca
aactacagatcaacttcgccatcgtattcacctgcatctccatcttactccccatcaagt
cctgcattcagccctgacagcccgtccaactccggaacaggaccggaatacagcccaagt
tctccacaatacagtccgagtgcagtctactcaccgtcatcaccagcttactcgacatca
tccagcgacgaggatgaagaaagcacaggctaa
DBGET
integrated database retrieval system
