Musa acuminata (dessert banana): 135607088
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Entry
135607088 CDS
T03447
Name
(RefSeq) putative transcription elongation factor SPT5 homolog 1
KO
K15172
transcription elongation factor SPT5
Organism
mus
Musa acuminata (dessert banana)
Pathway
mus03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
mus00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
135607088
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mus03021
]
135607088
03019 Messenger RNA biogenesis [BR:
mus03019
]
135607088
Transcription machinery [BR:
mus03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
135607088
RNA polymerase I system
135607088
Messenger RNA biogenesis [BR:
mus03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
135607088
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW1_SPT5
KOW2_Spt5
Spt5-NGN
KOW6_SPT51-2
KOW7_SPT5
KOW4_SPT5
KOW
KOWx_SPT5
KOW5_SPT5
Spt5_N
GPKOW_C
DUF4438
Ribosomal_L19
KOW6_SPT5
Motif
Other DBs
NCBI-GeneID:
135607088
NCBI-ProteinID:
XP_064954670
LinkDB
All DBs
Position
BXJ2-3:6032633..6044202
Genome browser
AA seq
1031 aa
AA seq
DB search
MARGRHRDEDDDFIDDDEEEEMEEEEEEEEEEVVGGKGRQKRRRSEFIDDVAVEDDEEEE
EEDEDDEDDGGHRGRKQRRRSGSEFFELEAVVDSDDEEEEEEGEDDFINDAGADLPDEDD
NRRLPHRPILMQEDQEDVEEMERRVKERYSKSNQIDYAEDATDVEQQALLPSVKDPKLWM
VKCAIGHERETAICLMQKFIDRADLQIRSVIALDHLKNYIYVEAEKEAHVKEACKGLRNI
FSSAKVMLVPIKEMTDVLSVESKAVELSRDTWVRMKIGIYKGDLAKVVDVDNVRQKVTVK
LIPRVDLQTLANKLEGRDIGKKKTFVPPPRFFNIDEAREMHIRVERRRDKDSGEYFEMVD
GMMFKDGFLYKIVSLRSISSQNIQPTFDELEKFRKPGDDVDGDVASLSTLFANRKKGHFM
KGDAVIVVRGDLKNLMGWVEKVEEETVHVRPKMTGLPKTLAFNEKELCKYFKPGDHVKVV
SGVQEGATGMVVKVEGHVLIILSDTTKEHIRVFADHVVESSEITTGVTRVGDYELHDLVL
LDNMSFGVIIRVETEAFQVLKGVADRPEIVLVKLREIKCKIERRSNAKDRSNNIVSIKDV
VRVVEGPWRGKQGPVEHIHRGFLFIHDRHHLEHAGFICSKAQSCVVVGGSHGGSDRKSVD
SLDSRFGAFRSSPHILQSPRRLPLRGPPVDFGGGFRGGRGHDSLIGKCIKIKSGPLKGYR
GRVKEVTGPLVRVELDSQMKIVTVNRKDIADATGVATPFRDSRYGLGSETPMHPSRTPLH
PYQTPMRDPGATPIHDGMRTPMRDRAWAPMSPARDSWEEGNPATWGTSPQYQLGTPVRTY
EAPTPGSGWASTPGGNYSDSATPRESSYGSAPSPYLPSTPSGQPMTPSSASYLPGTPGGQ
PMTPGNVGLDMMSPTIGGENEGNWYMPDIFVNIVKPGGDSHVGIVREVLMDGSCKVALGS
VGNGETLTIGSSDLEVVRPKKSDKIKIMNGTLRGVTGKLIGIDGSDGIVKLDDTYEVKIL
DMVILAKLATT
NT seq
3096 nt
NT seq
+upstream
nt +downstream
nt
atggctcgcgggcgtcatcgggacgaagacgacgactttatagacgacgacgaggaggag
gagatggaggaagaggaagaggaagaggaggaggaggttgtcgggggaaagggtaggcag
aagcggcgcagatctgagtttatcgacgacgtggcggtggaggacgatgaggaagaagag
gaagaagacgaggacgacgaggatgatggcggtcaccgaggccggaagcagaggcggcgg
tcgggctcggagttttttgagctcgaggcggtcgtggacagcgacgatgaagaggaagaa
gaggagggggaggatgattttataaatgatgctggagctgatctaccggatgaagacgat
aatagaaggttaccacatcgtccaattcttatgcaagaggatcaagaagatgtggaagag
atggagagacgagttaaagagagatactcaaaatcaaatcagatagactatgctgaggat
gctactgatgttgaacaacaagctctattgccatcggtaaaagatcccaagttgtggatg
gtgaaatgtgcgattggtcatgagcgtgagactgccatatgcctcatgcaaaaatttata
gatagggcagatcttcaaatcagatcagttattgcattggatcatctcaaaaattatatt
tatgttgaggctgagaaagaagcccatgtcaaagaggcttgcaaaggtctacgaaatata
ttttcctcagcaaaagtgatgcttgtgccaataaaagagatgactgatgttctctcagtg
gaaagcaaagctgttgaactctctagggatacgtgggttcggatgaagattggtatctat
aagggagatcttgctaaggttgtcgatgttgataacgtacgtcagaaagtgacagttaag
ctaatccccagggttgatttgcaaacactagctaataagttggaaggtagggatatcgga
aagaagaagacttttgttcctccacctcgtttttttaatattgatgaagcaagggagatg
catatccgcgtggagcgtagaagggacaaagactccggggaatattttgagatggttgat
ggaatgatgtttaaagatggatttctttacaaaattgtatctttaagatcaattagctcg
cagaacatacaacctacatttgatgaacttgagaagttcaggaaacccggtgatgatgtt
gatggggatgtggctagtttatctaccttgtttgctaacagaaaaaagggtcattttatg
aagggtgatgcagttattgttgttcggggagatctcaaaaatcttatgggatgggttgaa
aaagtcgaggaagaaactgtccatgtcagaccaaagatgacagggcttcctaaaacattg
gcttttaacgaaaaggagttatgcaaatacttcaaaccaggagatcatgtcaaagtggtc
tctggtgttcaggaaggtgcaactggtatggttgtaaaggttgaggggcacgttttgatc
atcttatcagacaccacaaaggaacatatacgtgtttttgctgatcatgtcgtggagagt
tctgaaattaccactggagttacgagagttggggattatgagttacatgatcttgtgttg
ctagacaatatgtcttttggtgtaattatacgtgtggaaactgaagcattccaggttctc
aaaggagtagcagacagacctgaaattgtgcttgttaaattaagggaaataaaatgcaag
attgagaggcggtcaaatgccaaggatcgatctaataacattgtttcgattaaggatgtt
gttcgggttgttgagggcccatggagggggaagcaaggtcctgttgagcacatacacaga
ggatttttgttcatccatgatcgacatcaccttgagcatgctggttttatttgttccaaa
gctcagtcttgtgtggttgtgggtggatcacacgggggcagtgatagaaaaagtgttgat
tccttggactctagatttggtgcttttcgatcttcacctcatattcttcagtcgccaaga
aggctgcctcttagagggccacctgttgatttcggtggaggatttagaggtggaagagga
catgattcgttaataggtaaatgcattaagattaaatctggtcccttaaaaggatatcga
gggcgtgttaaggaggtaacaggtcctttagtccgggttgagctggattctcagatgaag
attgttacagtcaacagaaaagacattgctgacgcaactggtgtagcaacccctttccgt
gattcgagatatggattgggtagtgaaacacccatgcatccatcaagaacaccattacat
ccttatcagactccaatgagagaccctggagcaactcctatacatgatggaatgcggaca
ccaatgcgtgatcgggcttgggctccgatgagtcctgcaagggatagctgggaagaaggt
aatcctgctacctggggaaccagcccacagtatcagttaggaactcctgtccggacatat
gaagcacctactcccggttcaggttgggctagcacccccggaggtaactatagtgattcg
gcaacaccaagggaaagcagctatggaagtgcaccaagtccatacttaccttcaacacct
agtgggcagcctatgacacctagctctgcatcttaccttcctggtacccctggtggacag
cccatgacgcctggaaacgttgggttggatatgatgtctccaacaataggtggagagaac
gaaggaaattggtacatgcctgatatttttgttaacattgtaaaacctggaggcgattct
catgtcggaattgttagggaggtgctgatggatgggtcctgcaaagttgcactcggatca
gttggcaacggggagacactaacgattggttcatcagacttagaggtggtcagacctaag
aaatctgataaaattaagattatgaatggcacactgcgtggagtgacaggaaaactcatt
ggcatagatggttccgatggaattgttaaattggatgatacctatgaagtcaagatttta
gatatggtcattcttgctaaattagcaacaacatga
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