Musa acuminata (dessert banana): 135608259
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Entry
135608259 CDS
T03447
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15-like isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
mus
Musa acuminata (dessert banana)
Pathway
mus03013
Nucleocytoplasmic transport
mus03015
mRNA surveillance pathway
mus03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mus00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135608259
09122 Translation
03013 Nucleocytoplasmic transport
135608259
03015 mRNA surveillance pathway
135608259
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mus03019
]
135608259
03041 Spliceosome [BR:
mus03041
]
135608259
Enzymes [BR:
mus01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
135608259
Messenger RNA biogenesis [BR:
mus03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
135608259
Spliceosome [BR:
mus03041
]
Complex C
Other components
EJC/TREX
135608259
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
135608259
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
YihI
Motif
Other DBs
NCBI-GeneID:
135608259
NCBI-ProteinID:
XP_064957012
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All DBs
Position
BXJ2-3:40532211..40538895
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AA seq
428 aa
AA seq
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MGEARDNDAYEEELLDYDEDEEKAPDSAAAKASGESVKKGYVGIHSSGFRDFLLKPELLR
AIIDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAALV
LCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVHILKHKDILKNECPHIVVGTPGRILA
LARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKRFMQDPMEIYVDDEAKLTLHGLVQHYIKLTELEKNRKLNDLLDALDFNQVVIFVKSVN
RAAELNKLLVECNFPSICIHSGMSQEERLTRYKNFKEGLKRILVATDLVGRGIDIERVNI
VVNYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggtgaagccagggacaacgatgcttacgaggaggagcttcttgactacgatgaggat
gaggagaaggctcccgattctgccgctgccaaggcttccggtgaatcggtgaaaaagggt
tatgttgggattcatagttccggtttcagagacttcctgttgaagccagaacttctccgt
gcgatcatagattcgggttttgagcacccttctgaagtacaacatgaatgcatccctcaa
gctatccttggaatggatgtcatctgccaagcaaaatctggaatggggaaaacagctgtt
tttgttctttcaactctgcagcaaattgagccagttgcgggccaagtagctgcacttgtg
ctatgtcataccagagaattggcctatcagatctgtcatgaatttgaaagattcagcact
tatttgcctgatattaaggttgctgtattctatgggggagttcacatcttgaagcacaag
gacattttgaagaatgaatgccctcatatcgttgtgggcacaccaggaagaatactggca
cttgcaagagataaagatctttctttgaagaatgtgaggcattttattcttgatgaatgt
gacaagatgctcgagtcccttgacatgcggagagatgtgcaggagattttcaaaatgaca
cctcatgacaaacaagttatgatgttctcagcaactctcagcaaggagatccgccctgtt
tgcaagagattcatgcaagatcctatggaaatatatgttgacgatgaggccaaactgaca
ctgcatggtttagtacagcactacattaaactgaccgagttggagaagaatcggaaactg
aatgatcttttggatgcactggacttcaatcaagttgtgatctttgtgaaaagtgtgaat
cgagcagcggagctgaacaagttacttgttgagtgcaactttccatcaatctgtatacac
tctggcatgtcacaggaagaaaggttgaccaggtataagaatttcaaggaaggtctcaaa
aggattcttgttgctactgatctggttggcagaggaattgatattgagcgagtcaacatt
gtagtaaactatgacatgccagattctgcagacacctacctgcacagggttggaagggct
gggcgatttggtaccaaaggacttgccattacatttgtctcatcagcttcagactctgat
gttcttaatcaggtccaagagaggtttgaggtggacataaaggagctgccagagcagatt
gacacttccacatacatgccctcatga
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