Musa acuminata (dessert banana): 135609664
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Entry
135609664 CDS
T03447
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3-like isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
mus
Musa acuminata (dessert banana)
Pathway
mus03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mus00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
135609664
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mus03019
]
135609664
03012 Translation factors [BR:
mus03012
]
135609664
Enzymes [BR:
mus01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
135609664
Messenger RNA biogenesis [BR:
mus03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
135609664
Translation factors [BR:
mus03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
135609664
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
dsrm
AAA_22
nSTAND3
AAA_19
ATPase
T2SSE
AAA_23
AAA_16
ABC_tran
Motif
Other DBs
NCBI-GeneID:
135609664
NCBI-ProteinID:
XP_064959225
LinkDB
All DBs
Position
BXJ2-4:complement(5461487..5475014)
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AA seq
1156 aa
AA seq
DB search
MMRRGLGFGLASLLRPERFAATSLGRKVGALSFLSRRSTSSTGGDVNAGCCYRWQRGFCG
YAVEQFSDDEYECEFESHKPSSEANIDEWRWKLSLLLRGTEEQEIISRDKRDRRDYEQIS
NLAKRMGLYSELYGKVVVASKVPLPNYRPDLDDKRPQREVMIPLSLQRRVEGLLQEHLDR
VLLASNIVNDELGRSSSSKDVEDVDVDENQDSLVDSSVMEKILQRKSIRMRNLQRTWQDS
PEGVKMLNFRNSLPAYKEKDGLLSAIARNQVIVISGETGCGKTTQLPQYVLESEIESGRG
AFCNIICTQPRRISAMAVAERVSAERGENLGETVGYKVRLEGMKGKNTHLLFCTSGILLR
RLLGDRNLNGVTHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLILMSATLNAELFSNY
FGGAPTIHIPGFTYPVRAQFLEDILEKTGYKLTSFNQIDDYGQEKLWKTQRQLMPRKRKN
QITALVEDALQNSSFEGYSSRARDSLASWTPDCIGFNLIEAILCHICRKERPGAVLVFMT
GWDDISCLRDQLRAHPLLGDPNRVLVLTCHGSMATSEQKLIFENPPPNIRKIVLATNMAE
ASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISKASARQRRGRAGRVQPGECYHLY
PRCVYDAFAEYQLPELLRTPLNSLCLQIKSLQVGSIGEFLSAALQPPEPLTVQNAVEFLK
MIGALDEQENLTNLGRYLSVLPVDPKLGKMLIMGAVFRCLDPVLTVVSGLSVRDPFLLPQ
DKKDLAGTAKSRFSAKDYSDHMALVRAYEGWKDAEREGSAYEYCWRNFLSAQTLQAIHSL
RKQFSFILKDSGLLDADSSINNSLSHNQPLVRAIICSGLFPGIASVVHREKSLSFKTMDD
GQVLLYANSVNAKYQTIPYPWLVFSEKVKVNTVFIRDSTGVSDSVLILFGGTLIRGEMAG
HLKMLDGYIDFFMDPSLTECYWNLKAELDNLVQRKLLDPRTDIHKEGRYLMLAVQELVSG
DLCEGRFVFGRETRRTRFSGNEGNKNNIVKDGTNPKSLLQTLLMRAGHSPPKYKTKHLKT
NEFRAIVEFKGMQFVGKPKKNKQLAERDAAIEALEWLTHTSDKSHQVEDDDSPLDITENM
LKLLNRPRRRSRRRSG
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atgatgcgtcgcggattagggttcggcttagcgtcgcttcttagacccgagaggttcgcg
gcaacgtcattgggtcgaaaggtcggagccttgtctttcctctcgcggcgttcgacctcc
tcgactggtggagatgttaatgctggatgctgctatcggtggcagcgcggcttctgcggc
tacgccgtggaacagttctccgacgacgagtatgagtgcgaattcgagagccacaagcct
tcttcagaggccaacattgatgaatggagatggaaacttagtttgctcttacgtggcact
gaagagcaagagattatttccagggacaaaagagaccgacgtgattatgaacaaatatca
aatcttgcaaaacgaatgggtctctacagtgagctttatggaaaagtggtggttgccagc
aaggttcctctgcctaattatagacctgatcttgatgataagcggccacaaagagaagtg
atgatccctcttagcttgcagaggagggttgaaggtttactgcaagaacaccttgatagg
gtgctattagcatccaacattgtcaatgatgaattgggacgtagttcttccagcaaggat
gtggaagatgtagatgttgatgaaaaccaggattccttggttgacagttcagtcatggaa
aagatacttcagagaaagagcatacgaatgaggaacttgcaaagaacttggcaggactca
ccggagggtgtgaagatgctgaattttagaaactcacttccagcatacaaggagaaggac
ggactcctctctgctattgcacgcaatcaggtcatagtaatttctggggaaactggatgt
ggtaaaacaactcaacttcctcagtatgttctagaatctgagatagaatctgggcgtggg
gcattttgcaacatcatttgtacacaaccgcgaagaatatctgctatggctgttgctgaa
agagtttcagcagaaagaggagaaaatcttggtgaaacagttggttacaaagttcgatta
gagggaatgaagggaaagaatacacatctcctcttttgtaccagtggaattctgctaaga
agattgcttggagaccgaaatttgaatggtgtaactcatgtttttgttgatgaaattcat
gaacgaggcatgaatgaagatttcttgttgattgtgttaaaggaccttcttccacgtcgc
cgtgatttgagattaattttgatgagtgcaactttgaatgctgaattgttttcaaactac
tttggaggagctccaacaatccatattccagggttcacatatcctgtaagggcgcagttt
cttgaagatatacttgagaaaactggatacaaactgacttcttttaaccaaattgatgac
tatggccaagagaaactttggaagactcagaggcagctaatgccacgtaaaagaaaaaat
cagattactgcactcgttgaggatgctcttcaaaattcaagttttgagggatacagttcc
agagcacgtgattctttggcctcctggacacctgattgcataggttttaatcttattgag
gctattctgtgtcatatatgtcgtaaggaacgaccaggtgctgtccttgtatttatgact
ggttgggatgacattagttgcttgagggatcagctgagggctcatcctctcttaggagat
ccaaacagggttttggtacttacatgtcatggttctatggctacttctgagcagaaactc
atatttgaaaatccaccacctaatatacgaaagatagtccttgcgacaaacatggctgaa
gcaagtattacaatcaatgatattgtgtttgttgttgactgtggtaaagcaaaagagacc
acctatgatgcactgaataatacgccttgcttgctgccatcctggatctctaaagcttct
gcccgccaaaggcggggtagagctggtcgtgtgcagcctggggagtgctaccatctctat
cctagatgtgtatatgatgccttcgcagaatatcagcttcctgagcttttaagaactcca
ttgaactccttatgtttgcaaataaaaagtttgcaggttggtagcattggggagttctta
tctgctgccttgcagccaccagaaccactcactgtccaaaatgctgttgaatttctgaag
atgattggagcactagatgaacaggaaaatcttacgaatcttggtcgatatctatcagtg
cttccggttgatccaaagctaggaaagatgcttatcatgggtgctgtctttcgttgcctt
gatccagttcttacggtagtgtctggattaagtgtcagagacccttttctcttaccgcag
gacaagaaggatttggcaggaactgcaaaatcaagattctcagctaaggactacagtgat
catatggctcttgtccgtgcatatgagggatggaaagatgcagagagagaaggttctgca
tatgagtactgctggaggaacttcctttcagcccaaactcttcaggctatccattcactt
aggaagcaatttagttttattctaaaagattctggtcttttagatgctgactccagcatc
aataacagcttaagccataatcagccactggttcgtgctatcatatgctccggactcttt
cctgggatagcatcagttgtgcacagagagaagtctctgtctttcaaaacgatggatgat
ggccaggtcctactttatgctaattctgtaaatgcgaagtaccagacaatcccttatcca
tggttggtctttagtgagaaggtcaaagtgaatactgtttttattcgtgattctacaggt
gtatctgattcagtactgatcttgtttggtggaaccctcatcaggggagaaatggctggg
cacttaaagatgttagatggctacattgatttcttcatggatccaagtttaacagaatgc
tactggaacctcaaggcggaacttgataaccttgtacaaagaaagcttctagatccgaga
acagatatccacaaagaaggcaggtacctaatgcttgccgtgcaggagctcgtctcaggt
gacctgtgtgaaggaaggtttgtatttggacgggaaacaagaaggaccagatttagcggc
aacgagggcaacaagaacaatattgtgaaagatgggaccaacccaaaaagcttgctgcaa
accttgttgatgagggcaggccacagcccaccaaagtacaagacgaagcatctgaagaca
aatgaattccgggcaatagtggaattcaaagggatgcaatttgtgggaaaaccaaagaag
aacaagcagcttgctgagagggatgctgctatagaagctttggaatggttgacccacact
tcggacaagagccaccaggttgaagatgatgactccccacttgatatcactgagaatatg
ctgaagcttcttaacagaccaaggcgaaggtcaaggcgtcgttcgggctga
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