Musa acuminata (dessert banana): 135610805
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Entry
135610805 CDS
T03447
Name
(RefSeq) regulator of nonsense transcripts 1 homolog isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
mus
Musa acuminata (dessert banana)
Pathway
mus03013
Nucleocytoplasmic transport
mus03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mus00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
135610805
03015 mRNA surveillance pathway
135610805
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mus03019
]
135610805
Enzymes [BR:
mus01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
135610805
5.6.2.5 RNA 5'-3' helicase
135610805
Messenger RNA biogenesis [BR:
mus03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
135610805
mRNA cycle factors
Common to processing body (P body) and stress granule
135610805
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
DEAD
SLFN-g3_helicase
NPHP3_N
UvrD-helicase
nSTAND3
Helicase_RecD
ATPase
PhoH
SRP54
AAA_16
AAA_22
Hydin_ADK
Ribosomal_S13_N
AAA_25
AAA
AAA_32
Motif
Other DBs
NCBI-GeneID:
135610805
NCBI-ProteinID:
XP_064961835
LinkDB
All DBs
Position
BXJ2-4:39283857..39303960
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AA seq
1269 aa
AA seq
DB search
MAGQSVNNLYETASQPDTSGDAYTFLEFNTQDDFDDYPEFQELSQPSRSTAWPPPSPPPE
PVRDTPAADLQAPDSASPSPARSPSASSSSKVRGASGGQAASAGAVDALAAGMSGLNFEE
TGDENYEFGKGDFTEHACRYCGLQNPACVVRCNIPTCRKWFCNSRGNTSGSHIVNHLVRA
KHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLNVNALKDMN
WDLSQWCPLIDDRCFLPWLVKVPSEQEQLRARQISAQQINKLEDLWKTNPDASMEDLEKP
GVDDEPQPVSLKYEDAYQYQNVFAPLIKLEADYDKLMKESQSKDNVSVRWDIGLNKKRIA
YFVFPKEDNELRLVPGDELRLRYSGDTGHPAWQSVGHVIKLTAQEEVALELRASQGVPVD
VNHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEHQVVRNVLPRRFG
APGLPELNASQVFAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSN
VAVDQLADKISSTGLKVVRLCAKSREAVMSPVEHLTLHYQVRHLDTSEKSELHKLQQLKD
EQGELSSSDEKKFKALKRATEREILQSADVICCTCVGAGDPRLENFRFRQVLVDESTQAT
EPECLIPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGHKTFRLQVQY
RMHPCLSEFPSNSFYEGTLQNGVTVNERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGT
SYLNRTEAANVEKLVTTFLRSGVIPSQIGVITPYEGQRAYIVSYMSRNGALRQQLYKEIE
VASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQ
PLWNSLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNSRLFYGGGPAMVQTDNYGPVS
SSSPLAEKRGGHIKGHSYVPFGPSNGTQKPGMHPPGYPLPCVPLPPFAGGPHSQPYAIPT
RGAVHGPLGAVPQVPQPGNRGFGAGRGNAGGPIGGHLAHQQNSQQTLGIGSAFNFPPFDD
SNSQPSVGAPSSQTGLMTQMPVQGLGQAFRDGLSVGGMSQDFIGDDFKSQGSHVAYNVAD
FSAQASQSGFGVDYVSQGPHAGFPGSYLNQSTQPGYSHLGTGNDFLFQQEYMPHGSQGLF
TQAGFNDPSQDESSQSHFGMGGPSSLQSQALLNPLYSQPFAHYNAQPQNLQSPPQQNQGS
PNQKLHYNG
NT seq
3810 nt
NT seq
+upstream
nt +downstream
nt
atggccgggcagtccgtgaacaacctctacgagacggcgtcccagcccgacaccagcgga
gacgcctacaccttcctcgagttcaacacccaggacgacttcgacgactaccccgagttc
caggaactctcccagccctcccgatcgaccgcttggccccctccctctcccccaccagag
cccgttcgggacaccccggccgccgatctgcaggcaccggactccgcttccccttccccc
gcgcgctccccctccgcctcctcgtcctccaaggtcaggggtgcttctggcggtcaggca
gccagcgctggcgcagttgatgccctcgcggccggcatgagcgggcttaacttcgaggag
actggcgatgaaaattatgaatttggcaagggggatttcacggaacacgcttgccggtat
tgtgggctgcagaaccccgcctgtgttgtgaggtgcaacattcctacgtgcaggaagtgg
ttctgtaactcgagggggaacacctcgggctcccatatcgtcaatcatctggttcgagca
aagcacaaagaagtttgtctccacaaagacagcccattaggagaaacaattcttgaatgc
tataattgtggttgtcggaatgtttttctccttggatttatttctgctaaaacagaaagt
gttgttgttctcttgtgcagagaaccatgtttaaatgtcaatgcactaaaggacatgaat
tgggatctaagtcagtggtgtccactcattgatgacaggtgtttcctaccgtggcttgtt
aaggttccttcagaacaggaacaattgagagcacgccaaattagtgctcagcaaatcaac
aaactggaagatctttggaagacaaaccctgatgcttctatggaagatcttgagaagcct
ggagtggatgatgaacctcagcctgtttctttgaagtatgaagatgcataccagtaccaa
aatgtatttgctccacttattaagcttgaagctgactatgataagttgatgaaagaatca
caaagtaaagacaatgtcagtgtacgctgggatatcggtcttaacaaaaagcgcatagcc
tattttgtctttcccaaggaagataatgaactaaggcttgttcctggagatgagttgcgg
ctgcgatattctggcgacacaggtcatcctgcatggcaatctgttggacacgtgattaaa
ctaactgcacaagaggaggttgcacttgaacttcgtgcaagccagggagtccctgtagat
gtgaatcatggctttagtgtggattttgtctggaaaagtactagctttgacagaatgcag
ggagctatgaagacttttgctgtggacgaaacaagcgtcagtggttacatatatcatcac
cttttgggtcatgaagttgaacaccaagtagtccgtaatgtattacctcgacggtttggc
gcccctggtcttccagagctaaatgcatcccaagtttttgctgttaagagtgtcctccag
aaaccaataagtttaattcagggcccacctggtacgggaaagactgtcacatctgcagca
attgtatatcacatggctaaacagggccaagggcaggttctagtatgtgctccaagcaat
gttgctgttgaccaacttgctgataagataagctcaactgggttgaaggttgtcaggctt
tgtgctaaatcaagagaagctgtcatgtctcctgttgagcatctaacacttcactatcag
gtccgccatcttgatacatctgaaaagagtgaacttcataagctgcagcagttaaaagat
gaacaaggtgaattgtcaagcagtgatgaaaagaagttcaaagcactaaaacgggctact
gaaagggagatattgcagagtgctgatgtaatttgttgcacatgtgttggtgcaggagac
ccccggcttgaaaatttccgattccgccaggttcttgttgatgagtctacacaggcaaca
gagcccgagtgtcttattccattagttttaggtgtcaaacaggttgttcttgttggagat
cattgtcagcttggtccagtcataatgtgtaaaaaggctgctcgtgcaggattagcgcag
tctctctttgagcgccttgttcttcttggtcataaaacttttagattgcaggtccagtac
agaatgcatccttgcttatctgaatttccttctaatagcttctatgagggcactcttcag
aatggagtgacagttaatgagaggcaatcatctggcattgattttccttggccggttcca
aaccgtcctatgtttttctatgtgcagatgggccaagaagaaattagtgcaagtgggacc
tcttatctcaatagaactgaggctgcaaatgttgaaaaacttgttactacttttttaaga
agtggtgtcatacctagtcagataggagttattacaccatatgaggggcaaagggcgtac
attgtgagttatatgtcgaggaatggtgctcttagacagcagctttacaaggaaattgag
gttgctagtgttgactcctttcagggtagagagaaagattacattattctgtcttgcgtg
agaagtaatgaacatcagggtattggatttcttaatgatccacgtagattgaatgttgca
ctaactcgagctcgttatggaattgttatccttgggaatcccaaggttctaagcaaacag
cctctttggaatagtttgttgacacattacaaggagcatgagtgtcttgtagaaggacca
cttaacaatttgaagcaaagcatggtacagtttcagaagccaaaaaagatttacaacagc
agacttttctatgggggtggtccagcgatggttcagactgataactatggtcctgtcagt
tcctcaagcccgcttgctgagaagagaggtgggcacattaaaggtcattcttatgtccca
tttggcccttcaaatggcacacaaaaacctggtatgcatccaccgggatatcctttgccc
tgtgtccctcttccgccatttgctggaggtcctcattctcagccatatgcaattccaact
cgtggtgcggttcatggacctttaggggctgttccacaggtcccacagcctggtaatagg
ggttttggggccggtcgtggtaatgctggtggtcctattggtggtcacctggctcatcag
caaaattcccagcaaactttgggtattgggtctgctttcaactttcctccctttgatgat
tcaaatagtcaaccatctgttggtgctccatcatctcagactggattaatgactcagatg
ccagttcaaggcctcggtcaagcatttcgtgatggactttctgttggtggcatgtcacag
gactttattggtgatgactttaaaagccaaggatcacatgttgcatataatgttgctgat
ttttctgcacaggcttctcaaagtggatttggtgttgattatgtctcccaaggtcctcat
gctggtttcccagggagttatttaaatcagagtacccagccaggatattcccatttgggc
actggaaacgattttttgtttcagcaggaatacatgccgcatggatcacaaggtttattc
acacaagcaggattcaatgatccatcacaagatgaatcttctcagagccactttggcatg
ggtgggcccagttctcttcagtcacaggcattgctaaaccctctgtattcacaacccttt
gctcattataatgctcagcctcaaaatctgcagtctccaccacagcaaaatcagggctca
cccaatcagaaacttcactacaatggctga
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integrated database retrieval system
