Musa acuminata (dessert banana): 135611961
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Entry
135611961 CDS
T03447
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
mus
Musa acuminata (dessert banana)
Pathway
mus03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mus00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
135611961
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mus03021
]
135611961
03019 Messenger RNA biogenesis [BR:
mus03019
]
135611961
Transcription machinery [BR:
mus03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
135611961
Messenger RNA biogenesis [BR:
mus03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
135611961
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
135611961
NCBI-ProteinID:
XP_064963698
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All DBs
Position
BXJ2-5:340450..348684
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AA seq
1039 aa
AA seq
DB search
MEEERFPSSRDNPRVAADRPPRPAAAAPSIMVRFHAMLREREEELKEATGEDPPPPLTAD
DVVRCYEDVLAELTFNSKPIISELTMIAGHQVRYAKEIADAICARVLEVPVDQKLPSLYL
IDSIVKNIGHEYVKILATRLPKVFCEAYNQVHPSQYSPMRHLFKTWSQVFPLSVLRKIED
ELQFSPSENERPSGIASTRPSKSTSPCPSHGIHVNPKYLEARRQFEQSSVIHAVDTHKNA
QESDYDLERLEGLSSENPEGWSGATRKLHSMPHARVSSGGLQAYGQKPSAQYSEYDLDQP
ELLPQRLSVAREGSPQTAMLRPSSMIDARGSVPYLKNKISVPLSPRRIGLKRPVSPPIVR
SHNGTSPRKIGGRASTSHFGSGYEPGRLSDPNGWLGRSWPSNEDPQHVEASTLYKLNNGS
GKQHPRDLIDAYGNPRGRVSSYEKFSKVQRLDVNGIASEAAARKWKNSDEEEYDWEDMSP
TLSDRSRRNSLPRVGPSAGSLGIRTGFSRPDPAVLESDFGRRSWPGQAQLHAADNPSFMV
EDRIAARGSRSASMMKYLDGTTSQSDIGKLSYLFPQPTHKSLSPRSRSRVTQMPVAAKEM
TSAAVQRLPIPHDYSPDIDLPHHRLSNAHADPLKMDMSTQRPHSSAPVILPSIHKSQPQP
LLPIPQTQKPISSSPDVSLATKSIAIQGSHPTRFVPEQQYDIADRKNKDSVKLLHLPYKP
SGLPHLNQQTQKQGISEPIPSQGSYGSILPPAEVMVPSYSVGQPLNFPPTLLHGATASAL
QSSSFVTPSIAVQNTTDALLHAPAGLLPPLPPGPPPSLSQIGLTSQSMSSAVSGSSTSAF
SGLISSLMAQGLISLKSPPQPQDSLGVEFNLELLKVRHESAINSLYADLPRQCTTCGLRF
KCQEEHSSHMDWHVTKNRISRNRKQKPSRKWFVSAKEWLSGAEILGNDVVPGFLPTESVA
EKKEDKEVAVPADENQNVCALCGEPFEDFYSDETEEWMYRGAVYLNAPDGNLEGLDRSQL
GPIVHSKCRSETNECSAPT
NT seq
3120 nt
NT seq
+upstream
nt +downstream
nt
atggaggaggagaggttcccgtcttcgcgggataaccctagggttgccgccgaccgcccc
ccacgtccggctgcggcggcgccatcgatcatggtgcggttccacgccatgctccgggag
cgggaggaggagttgaaggaggccacgggagaggacccgcctccgcccctgaccgcggat
gatgtcgtccggtgttacgaagacgtcctcgcggagctcaccttcaactcgaaacccatc
atctcggaactcactatgatcgccgggcatcaagttcggtacgccaaggagatcgcagat
gccatttgcgctcgggttcttgaggtacctgtggatcaaaaactgccttctttgtatctt
attgatagtattgtgaagaatataggtcacgaatatgtgaaaattcttgctactcggctt
cctaaggtgttttgtgaggcatacaatcaagtccatccatcgcaatattctcccatgcgt
cacctcttcaagacctggtcacaagtctttcccctttcagtcctacgaaaaattgaggat
gagctccaattttctccatccgagaatgagaggccatcagggattgcaagcaccagacca
tcaaagtcgacatcgccttgtccatctcatggtattcatgtaaatccaaagtatttggaa
gcacgtcgacaatttgaacaatcttctgtgattcatgcagtggacactcataaaaatgca
caggagtctgattatgacttggaaaggttggagggactttcttcagagaatcctgaagga
tggtctggagctacacgaaaacttcatagtatgccacatgcaagagtttcttctggtggt
ttacaagcttatgggcagaaaccctccgcacagtacagtgaatatgatctcgatcaacct
gaattacttccccagcgcctttctgtagcaagggaaggctcaccacaaacagcaatgttg
cgtccttcctcaatgattgatgccagaggatcagttccttatttgaagaacaaaatatca
gtgccattatctcctcgaagaattggtttgaaaaggcctgtatcaccacctattgtgaga
tcccataatggaacttctccaaggaagattggtggaagggcttcaacatctcattttgga
tctgggtatgaacctggcagacttagtgatcctaatggttggttgggtaggagctggcca
tccaatgaagaccctcagcatgtggaagcatccacactatacaagcttaataatggatct
ggcaaacagcacccaagagacttgattgatgcttatggaaatcctagaggtagggtttct
tcttatgaaaagttttcgaaggtccagcgtcttgatgtgaatggcatagccagtgaggca
gctgccagaaaatggaagaactctgacgaagaagagtatgattgggaggatatgagtcca
actttatctgatcgaagtagaaggaatagcctgccacgagttgggcctagtgctggaagc
ttaggcatccgaactggcttttctagacctgatcctgcagtactggaatcagattttgga
aggcgtagttggcctggtcaagcacagcttcatgcagctgataatccctcatttatggtt
gaagatagaattgctgcccgtggatctcgttctgcatctatgatgaagtatctggatggt
acaacaagtcagagtgacattggaaagttaagttacctgtttccacagcctacacacaaa
agtctaagcccaaggtcacggagcagggttactcaaatgcctgttgcagctaaggaaatg
acatcagcagctgttcagaggctacctattccacatgattattcacctgatatagatttg
ccgcaccacaggttatcaaatgctcatgctgatcccttgaaaatggacatgtcaacacaa
agaccacattcatctgctccagttatcttgccttctattcataaatctcagccacagcct
ttacttccgatacctcaaactcaaaaaccaatcagtagttcacctgatgtttcactagct
actaagtcaatagcgatccaaggatcccacccaactcgattcgtccctgagcagcaatat
gacattgctgataggaagaacaaagattcagttaagttgctccatctaccttataaacct
tctggattacctcatctgaatcagcaaactcagaaacaagggatttctgaaccaattcca
tctcaggggtcttatggaagtattcttccacctgcagaagtcatggttccatcttactcg
gttggacagcctctaaatttcccaccaacactattacacggggctacggcttctgctttg
caatcttcttcatttgttacaccttctatcgcagtgcaaaatacaactgatgcactttta
catgcacctgctggccttttgccacctctacctcctggaccaccaccatctttatcacaa
ataggacttacatctcaaagtatgagttctgcagtatctggctcatctacaagtgcattt
tcaggccttatcagtagtctcatggcacaggggttgatatcactgaagtcacctccacaa
cctcaggattctttgggggttgagtttaatctggaacttcttaaggtgaggcatgagtct
gcaattaattctttatatgctgatcttccaagacaatgcacaacttgtggcctgcgtttc
aagtgccaagaagagcacagtagtcatatggattggcatgtaaccaaaaaccggatatca
agaaaccgtaaacaaaagccctctcgcaaatggtttgtgagtgcaaaggaatggcttagt
ggtgcagaaatactcggaaacgatgttgttcctggttttttgcccactgaatcagttgca
gagaaaaaagaagacaaagaggtagcagttcctgcagatgaaaatcagaatgtttgtgca
ttatgcggggagccattcgaggacttctacagtgatgagacagaggaatggatgtatagg
ggggcagtgtatctgaatgctccagatggaaatcttgaaggattggataggtctcagctg
ggtccaattgtccactctaagtgcaggtctgagactaatgaatgttctgcaccaacataa
DBGET
integrated database retrieval system
