Musa acuminata (dessert banana): 135612971
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Entry
135612971 CDS
T03447
Name
(RefSeq) DNA mismatch repair protein MSH6-like
KO
K08737
DNA mismatch repair protein MSH6
Organism
mus
Musa acuminata (dessert banana)
Pathway
mus03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mus00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
135612971
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mus03400
]
135612971
DNA repair and recombination proteins [BR:
mus03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
135612971
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
PTM_DIR17_Tudor
LBR_tudor
Tudor_KDM3B
Motif
Other DBs
NCBI-GeneID:
135612971
NCBI-ProteinID:
XP_064965901
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Position
BXJ2-5:44796904..44816440
Genome browser
AA seq
1283 aa
AA seq
DB search
MASSRRLSGRSPLVRQQSQITSFFSPGKISKESPSPSPDPSPSQPKEKKPRLVIPPSPAS
GAKVSLTAAKNGHTKEVVGKRIKVFWPLDKAWYEGRVSSFDEMSGKHLICYVDGEEEALD
LGKEKFEWIGEETPRSLRRLRRMSDTVKMACSSADVDNEISEEDTADDEEWGKVGGEDAE
EDNSDEVELEDEDEDEDEEEFVASSGSLSKNSTGSKRRKKMNIAKLDCAKKIKFEKNRER
TASKASLIMTESNAAAPLNNDRRVQVLDSIGSTVTVEAAERFGKREAEKFRFLQEGRRDV
RGRRPGDKAYDPRTLYFPPEFLRTLSGGQRQWWEFKSKHMDKVLFFKMGKFYELFEMDAH
IGARELDLQYMKGEQPHCGFPEKNYSMNLERLTRKGYRVLVVEQTETPEQLEIRRKEMGS
KDKVVKREICAMVTQGTLMEGESLLRNPDTSYLLSIAEHFRSLEVPGKGGVVLGLCVVDV
STSKFMVGQFEDDLERHWLCSILSELRPVEVIKPSKALSPETERVIKNNTRNPLVNNLLP
FDEFWDAERTINEIRKYYSLSEHYLAAQNGCTSADNAGNCPVDLPDVLTELVNAGIDGSY
ALSALGGCLFYLRQAFLDEKLIKCAKFERLPCSGFFNNLQKPYMILDAAALENLEILENN
RSGGLSGTLFAQLDHCVTAFGKRLLKGWLARPLYDIRSIVERQDAVACFKGAGLTSALEF
RKELSKLQDMERLLSRLFVSCEAHGRNANRVILYEDAAKKRLQEFIASLHGCEAMIQACS
SLDTVLTSTKSTLLHYLLTPGKGLPDMCSVIEHFKDAFDWSEADRTGRIIPHEGGDVDYD
AACKKLKDIESNLMRYLKEQRKVLGNSEVNYVAVGKDLYLLEVPESLRGAVPAEYELQSS
KKGYFRYWTPKIKDFLSELSQAEAEKESKLKGILQRLIGQFSEHHSKWRQLVSVIAELDV
LISLAIASDYYEGPTCRPVIKEVCHENEPYLSARGLGHPMLRSDALGKGSFVPNDVRIGG
VGQPRFILLTGPNMGGKSTLLRQVCLAVVLSQLGADVPAECFELSPVDRIFVRMGARDNI
MAGQSTFLMELSETAGVLSSATQNSLVALDELGRGTATSDGQAIAASVFEYLVHRVQCRG
LFSTHYHRLILEYEKNTKVSICHMACQVGKGVGGVEEVTFLYRLAPGSCPKSYGVNVARL
AGLPSSVLQKAARKSNDFEISNGKHQPVAEVKISDTETDEGRTLIKKLLSISETWNLGED
SRVVTLSLLGDIQQRARWLVLGK
NT seq
3852 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcttcccgtcgccttagtggccgctctcctctggtgcggcagcagagccaaatc
acctccttcttctctcccggtaagatctccaaggaaagccctagccctagtcctgatccc
tctccatctcaaccgaaggagaagaagccccgtctagtaatccccccttctccggcttcc
ggcgccaaagtttctctcactgccgctaagaatggccacacgaaagaggtggtcggaaaa
aggatcaaggtcttctggccccttgacaaggcctggtacgaggggcgggtctcctccttc
gacgagatgtccggcaagcacctgatctgctatgttgacggtgaggaagaggcgcttgat
cttggcaaggagaaattcgagtggatcggggaggagacaccaaggagcctccgtcggctg
aggcggatgtcggatacggtgaagatggcttgcagttcagcggatgtggataatgagatc
agcgaggaggatactgccgacgacgaagaatggggtaaggttggcggggaagatgcggag
gaggataactcggatgaggtagaattggaggacgaggacgaggacgaggacgaggaagag
tttgttgcgagttcaggtagcctgtcgaagaactctactgggtcgaaaagaaggaagaag
atgaatattgcgaaattggattgcgctaaaaaaatcaaatttgagaagaatcgagagagg
actgcctctaaagcctctttaatcatgacagaaagtaatgctgctgcccctttgaacaat
gatagaagggtgcaagttttggatagtattggcagcaccgtaactgtcgaggcagctgaa
cgatttggaaaacgggaagcagaaaagtttagattcttgcaggaagggcgtagggatgtt
cgtggcaggcgtcctggagataaagcctatgatccaagaactctttactttcctcctgag
tttttgagaaccttgtcaggtggacagaggcaatggtgggagttcaagtcaaagcatatg
gataaggttttattcttcaagatgggaaagttctatgaattgtttgagatggatgcacat
attggtgcaagagagcttgatctgcaatatatgaagggagaacaacctcattgtgggttt
ccagagaagaactattcaatgaatttggagagattgactagaaagggataccgagttctt
gttgtagaacagacagaaacccctgaacagcttgaaattcgccgtaaagagatgggttca
aaagacaaggttgtgaaacgtgaaatatgtgcgatggtcacacaaggtacacttatggaa
ggagagtcactattgagaaatcctgatacttcatatttattatcaattgctgaacatttc
cgaagtcttgaggtccctggtaaaggaggtgttgttttaggcctgtgtgttgttgatgtt
tccacaagcaagttcatggtaggacaatttgaagatgatctggagcgtcattggttatgt
tcaatattgtctgaattgaggcctgtagaagtcataaaaccttcaaaggcacttagtcct
gaaactgaaagagtcataaagaacaatacaagaaatccattagttaacaatttattgcct
tttgatgaattttgggatgctgaaagaaccattaatgagatcagaaagtattatagctta
tcagagcattatctggcagcacaaaatggttgcacttctgctgataatgcaggaaattgt
ccagtagacctgccagatgtcttaactgagctagtgaatgctggcattgatggatcatat
gctctttctgctcttggaggctgtcttttttatttaaggcaggcttttctggatgaaaaa
ttgattaagtgtgctaaatttgagcgacttccatgctcgggtttttttaacaaccttcaa
aagccatatatgattcttgatgctgcagcacttgagaaccttgagatattggagaataac
agaagtggaggcctctcaggaacactttttgcacaactggatcattgtgttacagcattt
ggaaaaaggttgctcaaaggatggcttgcaagaccactttatgatataaggtcaattgtg
gaacgtcaggatgctgtagcttgcttcaagggtgctggtcttacatctgctcttgaattc
agaaaggaattatcaaagcttcaagatatggaacgtttgctttcacgactatttgttagc
tgtgaagctcatggaagaaatgccaatagagtcattctttatgaggatgcagcaaagaag
cggcttcaagaatttattgcatctcttcatggttgtgaagcaatgatccaagcatgctct
tccctggatactgtactgactagtacaaagtctactttactccattatttattgacacca
ggtaaaggcttacctgacatgtgttcagtcatagagcatttcaaggacgcttttgattgg
tcagaagctgatcgcactgggcgtattatacctcatgaaggaggtgatgttgattacgat
gctgcatgtaagaaactgaaggacattgagtctaatctgatgaggtacctgaaggaacag
cgtaaagtacttggaaattcagaggtaaattatgttgctgttgggaaggatttgtatctg
cttgaggtgccagagagtctaaggggagctgttccagctgaatacgaattgcaatcttct
aaaaagggctacttccggtattggacacctaaaatcaaagatttcctgtcagaactctct
caagctgaggccgagaaagaatctaaactgaaaggcattctccagaggctgataggacaa
tttagtgagcatcatagcaaatggaggcagttggtatctgtaattgcagagctagatgtt
ttgattagtctggcgattgcaagtgactattatgagggaccaacatgccgaccagttatc
aaagaagtatgtcatgaaaatgaaccttatttatctgctagaggtcttggacatccaatg
cttcgaagtgatgccttaggcaagggttcttttgttcccaatgatgtaagaattggtggg
gttggacagcctagatttatccttctgacaggtccaaatatgggtggtaaatcaactcta
cttcgccaagtttgtttagctgtagttttgtcacagcttggagcagatgttcctgcagaa
tgttttgagctctcccctgtagaccgcatctttgttcgtatgggtgctagggataatatt
atggctgggcaaagtacattcttaatggagctttcggagaccgctggtgtgctgtcttct
gccactcaaaattctctggtggcactagatgagctcgggaggggcacagcaacttctgat
gggcaagctattgcggcatccgtctttgaatatcttgtacatagagtacaatgtcgtggt
ttgttttctactcattatcaccgattaatactagaatatgagaagaataccaaggtttca
atttgtcacatggcttgccaagttgggaaaggagttggaggtgtggaagaagtcaccttc
ctttaccgattagcacctggttcatgtcctaaaagctatggtgttaatgttgctcgtttg
gcaggattaccttcttctgtgcttcaaaaggccgccaggaagtcaaatgattttgagatt
agtaatgggaagcaccagcctgtagctgaggttaagatttcagatacggaaactgatgag
ggaagaactcttataaaaaaattgctctctatttcagagacctggaatcttggtgaagat
tctcgggtggtaactttgagcttactcggtgatatccaacagagagcaaggtggctagtg
ctgggcaaataa
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