Musa acuminata (dessert banana): 135614132
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Entry
135614132 CDS
T03447
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3-I-like
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
mus
Musa acuminata (dessert banana)
Pathway
mus03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mus00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
135614132
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mus03021
]
135614132
03019 Messenger RNA biogenesis [BR:
mus03019
]
135614132
Transcription machinery [BR:
mus03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
135614132
Messenger RNA biogenesis [BR:
mus03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
135614132
U7-dependent histone pre-mRNA processing factors
135614132
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B
Lactamase_B_6
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
HAMP_2
Motif
Other DBs
NCBI-GeneID:
135614132
NCBI-ProteinID:
XP_064967239
LinkDB
All DBs
Position
BXJ2-6:1343626..1347325
Genome browser
AA seq
699 aa
AA seq
DB search
MASAMTGQTSSLKRRDTTAATAGPREGDQLIVTPLGAGSEVGRSCVYMSYRGKIVLFDCG
IHPAYSGMAALPYFDEIDPSTIDVLLVTHFHLDHAASLPYFLEKTTFKGRVFMTHATKAI
YKLLLSDYVKVSKVSVEDMLYDEQDILRTMDKIEVIDFHQTVEVNGIRFWCYTAGHVLGA
AMFMVDIAGVRVLYTGDYSREEDRHLRAAEIPQFSPDICIIESTYGVQLHQPRLIREKRF
TDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKRCMAVY
QTYINAMNERIRNQFANSNPFDFKHISPLKSIENFDDVGPSVVMASPGSLQSGLSRQLFD
KWCSDKKNACVLPGYVVEGTLAKTILNEPKEVTLMNGLTAPLNMQVYYNSFSAHADFAQT
SAFLNELMPPNIILVHGEANEMGRLKQKLIGQFADKNTKIMTPKNCQSVELYFTSEKMAK
TIGRLAEKTPEVGETVSGLLVKKGFTYQIMAPDDLHVFSQLSTANITQRISIPYSGAFSV
IKHRLKQIYESVEAPIEEPDVPTLIVHDRVTIRQETEKYVTMQWPSDPISDMVSDSVVAM
ILNISREGPKVTAVAEAEKTQEEMEKMAHKVIYSLLVSLFGDVKVGEEGKLIVTVDGDVA
RLDGKNGEVECDNEGLKERVKTAFRRIQSAVRPIPLSAS
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atggcatccgccatgaccggccagacttcgtctctcaagcggcgggatacaacggccgcg
acggcggggccgagggagggggatcagcttatcgtcaccccgttgggggcgggcagtgag
gtgggcaggtcctgcgtctacatgtcctacagaggaaagatcgtcttgtttgattgtggg
attcatccggcctactctgggatggctgcactgccttatttcgacgagattgatccctcg
actattgatgtgcttctcgtcacacattttcatcttgatcatgctgcatcgcttccatac
ttcttggaaaagactacgtttaaaggtcgggttttcatgactcatgctacaaaggctatt
tacaagcttcttttgtcggactatgtcaaagtgagcaaagtttcagttgaggatatgctc
tatgatgagcaagacatacttcgcacgatggataaaattgaggttattgattttcatcag
actgtggaagtaaatgggattcgcttttggtgctacactgctggtcatgtcctaggcgct
gccatgttcatggttgacattgctggtgtccgggtgctctacactggagactactcccgt
gaggaagatcgccatctccgtgctgctgaaatcccccagttctcaccggacatctgtatc
attgagtccacatatggcgtgcagctccaccagccccgccttatacgggagaaacgattt
acggatgtcatccactcgacaatctctcaaggcggtcgtgtgctcatccctgcttttgct
cttggcagagcccaagagttgctccttatccttgatgagtattggtcgaaccaccctgag
ttccataacattccgatatattatgcctctccccttgccaaaaggtgcatggctgtctat
cagacctacataaatgcaatgaatgagaggatcaggaaccaatttgcaaattcgaacccc
tttgacttcaagcacatttctccattgaagagcatagagaattttgatgatgttggtccc
tcagttgtgatggcaagtccaggtagcttacaaagtggtctctcgaggcaactatttgat
aaatggtgctcagataagaaaaatgcttgtgtgcttcctgggtatgtagtggagggtact
ctcgccaaaactatcctcaatgagcccaaagaagtcaccctcatgaatggtctcactgct
cctcttaacatgcaagtatactacaactctttttcagctcatgcagactttgcacagaca
agtgcttttttaaatgagcttatgccaccaaacataattcttgtacatggagaagccaat
gagatgggaaggcttaagcagaagcttataggccaatttgcggataaaaatacaaaaatc
atgacacctaagaattgccaatcagtagagttgtacttcacttctgagaaaatggctaaa
actattggaaggctagctgagaagacaccagaagtaggagaaacagttagtggcttactt
gtcaagaagggttttacatatcagataatggcaccggatgatcttcatgtcttctctcag
ctttctactgcaaacattacccagaggatctccatcccttattctggtgctttttcagtt
ataaagcataggctgaagcaaatatatgaaagcgttgaggctcctatagaagagcctgat
gtacctacattgattgtgcatgacagagtgacaatacggcaggaaacggagaaatatgtg
acaatgcagtggccatctgacccaattagcgatatggtatctgactctgtggttgctatg
atcttgaacatcagccgagaaggtccaaaggtaacagctgttgcagaagctgagaagaca
caagaagagatggagaaaatggcccataaagtcatctacagtttactcgtttcccttttt
ggggacgtcaaggttggagaggaaggaaagttgattgtcactgttgatggggacgtcgca
cggctggatggaaagaatggtgaagtagagtgtgataacgagggtttaaaggagagggtg
aaaacagcattccggcggatccagagtgctgtgaggcctatcccactttcagcatcctga
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