Musa acuminata (dessert banana): 135615112
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Entry
135615112 CDS
T03447
Name
(RefSeq) zinc finger CCCH domain-containing protein 45-like
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
mus
Musa acuminata (dessert banana)
Pathway
mus03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mus00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
135615112
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mus03021
]
135615112
03019 Messenger RNA biogenesis [BR:
mus03019
]
135615112
Transcription machinery [BR:
mus03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
135615112
Messenger RNA biogenesis [BR:
mus03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
135615112
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH
TFIIA
Torus
zf-CCCH_12
zf-CCCH_2
zf-CCCH_4
zf-CCCH_RBM22
CCDC53
Motif
Other DBs
NCBI-GeneID:
135615112
NCBI-ProteinID:
XP_064969262
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Position
BXJ2-6:complement(16456384..16473088)
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AA seq
718 aa
AA seq
DB search
MEDPEGALSFDFEGGLDSAAPAAAAAPLAPADPTAAAATAGAVPHSGAADPIAVAAGNVP
GRRSFRQTVCRHWLRGLCMKGDACGFLHQYDKERMPVCRFFRLYGECREQDCVYKHTNED
IKECNMYKLGFCPNGPDCRYRHAKLPGPPPPVEEVLQKIQHLGSFGYGSSNRFYHHRNTN
YNQQLDKNQLSSAPGLHNQNTAVKPASSFEPSDVKPSQSLVVQQSHQQQQQQQQQYQQQQ
QQQQQQQQQQQQQQQPPPPPTENQVPGIMNVSSNQSTRTASPLPQGQSRYFIVKSCNREN
LEISVQQGVWATQRSNEPKLNEAFESTENVILIFSINKTRHFQGCAKMTSRIGGLVGGGN
WKYSHGTAHYGRNFSVKWLKLCELSFNKTHHLRNPYNDNLPVKISRDCQELEPFIGEQLA
SLLYLEPDGELMAMLIAAESKREEEKAKGVGADEAADNPDIVLFEDNEEEEEEESEEEDE
SSGQATQGRGRGRGMMWQPHMPLVRGVRPVVGVRGFPPVMMGADGFGYADGFAAPDLFGP
RIFPPFGGPRFSGDFSAGHMSGLVFPGRPPQPGAVYPMGNLGMMMGPGRAPYMGGMPMAG
IGRSNRPVGVPPFLHPPPPLNNRAAKRDHRRPVSDRNDRYEAGSDQGNRGQEMVGNVGGV
DDDTGYWQGEKAPEDRYGAGRSLQNDESESEDEMAPRRSRHGNGKRKHRVSEGEAALD
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atggaagaccccgaaggagcccttagcttcgacttcgagggcggcctcgactccgccgct
cccgccgctgccgccgcccccctcgcgccggcagatcccaccgccgcagcggcgaccgcg
ggagcggtccctcactctggcgcagccgatccgatcgccgtagcagctgggaatgtccct
gggcggcggagcttcaggcagacggtgtgccgtcactggctccgtggcctatgtatgaag
ggcgatgcctgcggcttcctccaccagtacgacaaggagcggatgcccgtctgccgcttc
ttccggctctacggggagtgccgcgagcaggactgcgtttataagcacaccaacgaggac
atcaaggagtgcaatatgtataaacttggtttctgccccaatggacctgattgtcggtat
cgacatgcaaagcttcctgggcctcctccccctgtagaagaggttctccagaagatacag
catctgggttcttttggttatgggtcttcaaacagattttatcaccacagaaacactaat
tataaccaacaactggataagaatcagttgtcatcagctcctgggttacataatcagaat
acagcagttaaaccagcttcttcatttgaaccatcagatgtaaaaccatcacagtcccta
gtagtgcagcagtctcatcagcagcagcagcaacaacaacaacaatatcagcaacaacag
caacagcaacagcaacagcaacaacaacagcaacagcaacagcaaccaccacccccacca
acagagaaccaggtccctggaattatgaatgtctcatcaaatcaatcaaccagaactgca
tctccactccctcagggacaatctaggtattttattgtgaaaagttgcaatcgggaaaat
ctggaaatatctgtccagcagggtgtgtgggcaactcaaaggagtaatgagcctaaactt
aatgaagcatttgaatctacagagaatgttattttaatattctcgatcaacaaaactcgc
catttccagggatgtgctaagatgacctctagaatcggtggcttagttggtggagggaat
tggaaatattctcatggaactgcacattatggtcgaaatttttcagtcaaatggttaaag
ctttgtgagttgtccttcaataaaactcatcatctcaggaatccatataatgacaacctc
ccagtgaagataagtcgagattgccaagagttggagccttttattggtgagcagttggcc
tcactgctttatctcgagccggatggtgaactaatggcaatgctgatagctgcagagtcc
aaacgtgaggaggaaaaggccaagggagttggtgcagacgaggctgcagataatccagat
attgtcctgtttgaggacaatgaggaagaggaggaagaggaaagtgaggaggaggatgag
agcagtggccaagccacccaagggagaggaaggggaagagggatgatgtggcaaccacac
atgccactggtacgtggagtgaggcccgtggttggtgttcgaggcttccctccagttatg
atgggggctgatggatttggttatgctgatggttttgctgcaccagatctttttggtcct
cggatctttccgccatttggtgggccaagattttctggtgatttttcagcaggccacatg
tcgggcttagtctttcctggtaggcccccacagccaggggctgtctacccaatgggcaac
cttgggatgatgatgggacctggtcgggctccatatatgggtggcatgccaatggctggg
attggccgatccaatcgtcctgtaggagtaccacccttcctacatcctccacctccactg
aataatcgggctgccaagagggatcatagaagaccagttagtgatagaaatgacagatat
gaggctggatctgatcagggcaacaggggccaggagatggtgggaaatgttggtggagtg
gatgacgacacagggtattggcaaggtgaaaaggctcccgaggatagatacggtgcagga
agaagcttacaaaatgatgagagcgagagcgaggatgagatggcaccaagacgatcgagg
catggcaatgggaagaggaagcatcgtgtgtccgagggggaagctgccttggactag
DBGET
integrated database retrieval system
