Musa acuminata (dessert banana): 135615640
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Entry
135615640 CDS
T03447
Name
(RefSeq) uncharacterized protein LOC135615640 isoform X1
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
mus
Musa acuminata (dessert banana)
Pathway
mus03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mus00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
135615640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mus03019
]
135615640
Messenger RNA biogenesis [BR:
mus03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
135615640
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_12
TPR_1
TPR_19
TPR_8
ARM_TT21
TPR_MalT
Motif
Other DBs
NCBI-GeneID:
135615640
NCBI-ProteinID:
XP_064970515
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Position
BXJ2-6:41354190..41367962
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AA seq
845 aa
AA seq
DB search
MEAKESSTVPAATALAGSKDGPVSDESRLSDARGLAKEAAFLFQSRRLQECIDVLNQLLQ
KKHDDAKVVHNILVAEHYRDGCSDPRNLLDVLCKVKEQSEALAHSSGKQVECGNGSGNVM
ISGSKVNNASLQQISAINGGRILYAEECGTSVIMLNIAVVLYHVHEYAHALSVLEKLFQN
IEPVDERIALNVCLLLLDIASACQDISKAADVIQYLEKSFGIGHVGQGDCGSSIQQQTNP
GLKVASTSNIPAPDVSFAESSINGNVPENTDETVEYETLYSELDTGAENLERLILTDNLK
LSADQAASAIDMKLNLHLYKVRLLLHARNLKAAKREIKLAMNIARFGDSSTALLLKSQLE
YARGNHRKAIKLLMTSSNRSEPGMLCIFNNNMGCIYHQLGKHHTSIFFFSKALECTVSLR
SEKPLKLSNFSQDKSLFIMYNCGLQYLLRGRPLVAARCFDKTQPIFCNRPILWLRFAECC
VSALEKGVPRKSGSSLSDEEEVKVHVVGSGRLRRLVIDGFSSAHKYIDRSVEDGLITSDG
QHRLSLPFARRCLLNALYLLNNNGKVESSASFSRNEDDDSNHETSASAKNWNHNNVLAGD
LKASSAASASMPASNGDFKETKGGVILNMTLQSALSSYEEICRKENNMIRQAVLGNLAYV
ELSLGNPLKALSVAKELRQLSDSSRMYIFLSHVYAAEALCYLNRPEEAAEYLSFYVLEEN
DVQLPYSDEEREKWRIDRNGDGDELNGQHNAKTSEEFQGMMFMKPEEARGVLYVNLAAIS
AVQGNVEQASLLVKKALSALPTNPRAVLAAIYVDLLSGRTPDAVVKLRQCRHVRFFPAHV
TMGSK
NT seq
2538 nt
NT seq
+upstream
nt +downstream
nt
atggaagcaaaggaatcgtcgactgtgcccgcggcaacggctttggccggaagcaaggat
gggcctgtgagtgatgaaagtcgtctttctgacgccaggggattggccaaggaggcagct
ttcctgttccagagccggcggctccaagagtgcattgatgtcctgaatcagctactgcag
aagaagcacgacgatgcgaaggttgttcataacattcttgttgcagaacactaccgagat
ggttgttctgatcctaggaatctgcttgatgtcctttgtaaggttaaagagcaaagtgaa
gcacttgcacattcttctggaaaacaggtcgaatgtgggaatggtagtgggaatgttatg
atttctggatctaaagtgaataatgcttcactacagcaaatttctgctataaatggtggc
agaattctttatgcagaggagtgtggcacttcagtaataatgctgaacattgctgtcgtt
ctctaccatgtgcatgaatatgcacatgcattatcggttcttgaaaaattatttcagaat
attgagcctgttgatgagagaatagctcttaatgtgtgccttcttctattggatattgca
tcagcctgccaagacatttcaaaagctgcagatgttattcagtacctggaaaaatctttt
ggtattggtcatgtaggacaaggagattgtggaagcagcattcaacaacagacaaaccca
ggattgaaagttgctagtacaagtaacatccctgctccagatgtctcctttgcagaatca
agcatcaatggaaatgttccggaaaatactgatgagacagtagaatatgaaaccttgtat
tcagaactagatactggtgctgagaacttggagaggctcatcctaactgataacttgaaa
ttatcagctgaccaagcagcatctgccatcgatatgaagctaaatttacatctttacaag
gttcgattgttgctgcatgcaaggaacctgaaggctgccaaacgtgaaatcaagcttgcc
atgaacatagcacgttttggagattcatctacagcactccttttaaagtctcagttagaa
tatgctcgtggcaaccatcggaaagccatcaaattactgatgacatcaagtaataggtct
gagccaggcatgctttgtatcttcaacaacaatatggggtgcatatatcaccagcttggg
aaacatcacacttcaatttttttcttctctaaagctttagaatgcactgtgtccctgcgg
tccgagaagccactaaagctttctaacttttctcaggataaatcactttttataatgtac
aactgtggcttgcaatacttgctgcgcggaaggccattggttgcagctcgatgttttgat
aagacccaaccaatattttgtaacagacccattctctggctccgatttgctgaatgctgc
gtgtcagctctagaaaagggtgttccgagaaagagtggttcttcattatcagatgaggag
gaggttaaggttcatgttgttggatctggcagattgagacggttggtgattgatggcttc
agctcagcacataaatatattgaccgctcagtagaggatggtctaatcacctctgatggc
caacatagactctctcttccttttgctcggcggtgtctccttaatgctctgtatttactg
aataataatggaaaggtagagtcgagtgcttcattctctagaaacgaagatgatgattcc
aatcatgaaacctctgcaagtgccaagaactggaaccacaataatgtgttggcaggtgat
ttaaaggcatctagtgcagcatcagcctccatgcctgctagtaatggcgattttaaagaa
accaagggaggagtaatcttgaacatgacattgcagagcgctctttcttcatacgaggaa
atatgcagaaaagaaaacaacatgataaggcaggctgttcttgggaatctagcttatgtg
gagttgagtttaggaaatccattgaaagcattatctgttgcaaaagaacttaggcaattg
tcagactcttctagaatgtacatatttctgagtcatgtatatgcggctgaagcactttgc
tatctgaaccgaccagaagaagcagctgagtacttgtcattctatgttttagaagaaaac
gacgtccagttgccttacagtgacgaagaaagggagaagtggagaatagacagaaatggg
gatggcgacgagttaaatggtcaacataatgccaaaactagtgaagaattccaaggtatg
atgtttatgaagcctgaagaggctcgtggagtgctatatgtaaatcttgctgcaatttct
gcagtacaaggaaatgttgaacaggctagcctgttggtgaagaaagccctgtctgcactg
cccaccaatccaagagctgtgcttgctgccatctatgtggaccttctatcagggagaaca
ccagatgctgtagttaagttgagacagtgtagacatgtcagattcttccccgctcatgtt
acaatgggcagcaaatga
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