Musa acuminata (dessert banana): 135616157
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Entry
135616157 CDS
T03447
Name
(RefSeq) pre-mRNA-processing-splicing factor 8A-like
KO
K12856
pre-mRNA-processing factor 8
Organism
mus
Musa acuminata (dessert banana)
Pathway
mus03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mus00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135616157
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mus03041
]
135616157
Spliceosome [BR:
mus03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
135616157
Complex C
U5 SnRNP specific factors
135616157
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Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
135616157
NCBI-ProteinID:
XP_064971416
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All DBs
Position
BXJ2-7:complement(21672220..21683698)
Genome browser
AA seq
2332 aa
AA seq
DB search
MMPGPRMAPPPPAVQPPNSIPPSPGELEAQLVEKARKWQQLNAKRYGEKRKFGFVETQKE
DMPPEHVRKIIRDHGDMSSKKHRYDKRVYLGALKFVPHAVYKLLENMPMPWEQVRNVKVL
YHTTGAITFVNEIPWVAEPIYLAQWGSMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYA
DNLLDVEPLEAIQIELDDEEDAVVYSWFYDHKPLVKTKLINGPSYRRWHLSLPIMANLHR
LAGQLLSDLIDRNYFYLFDMESFFTAKALNVCIPGGPKFEPLYRDTEKGDEDWNEFNDIN
KLIIRQPLRTEYRIAFPHLYNNRPRKVKLSPYHGPMIMYIKAEDPDLPVFYFDPLINPIS
WKKVQHENDEEDFFLPQGVEPLLHETPIYTDTTAAGISLLFAPHPFNMRSGRTRRAEDIA
LVSEWYKEHCPPSYPVKVRVSYQKLLKCFVLNELHHRPPKAHKKKHLFRSLQATKFFQTT
QLDWVEAGLQVCQQGYNMLNLLIHRKSLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFH
LCREILRLTKLVVDANVQFRLGNVDAFQLADGLHYIFSHVGQLTGMYRYKYRLMRQIRMC
KDLKHLIYYRFNTGPVGKGPGCGFWAPTWRVWLFFLRGIVPLLERWLANLLARQFQGRHS
KGVAKTVTKQRVESHFDLELRAAVMHDILDAMPEGIRQNKARTILQHLSEAWRCWKANIP
WKVPALAVPIENTILRYVKSKADWWTNVAHYNRERIRRGATVDKTVCRKNLGRLTRLILK
AEKERQHNYLKDGPYITPEEAVVIYTTTAHWLESRKFSPIPFPPLWYKHDTKLLVLALER
LKESYSVAVRLNQSQREELGLIEQAYDNPHEALSRIKRHLSSQRVFKEVGIEFMDLYSHL
LPVYEIEPLEKITDAYLDQYLWYEGDRRQLFPNWVKPADSEPPPLLVYKWCQGINNLQAI
WDASDGQCVVVLQTKFEKLLEKIDLILLKRLLCLVLEPSLAEYITGKNNVVLSYKDMSHT
NSYGLIPGLQFASFVVQYYGLVLDLLLLGLTRATEIAGPSRMPNEFITYADTRVETRHPI
RLYSRYIDRVHMLFRFSREEARDLIQRYLIEHPDPNNENMVGYNNNKCWPRDARMRLMKH
DVNLGRSVFWDMKNRLPPSITTLEWENSFVSVYSKDNPNLLFSMCGFEVRILPKVRMAPE
AAFGNTEDGVWNLQNEQTKERTAMAFLRVDDEQLKVFENRVRQILMSSGSTTFTKIVNKW
NTALIGLMTYFREATVHTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVIFYTPKEIG
GLGMLSMGHVLIPQSDLRYSQQTDVGVTHFRSGMSHEEDQLIPNLYRYIQPWESEFIDSQ
RVWAEYASKRQEAGSQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTEFN
KYQVLKQNPFWWTHQRHDGKLWNLNNYRTDVIQALGGVEGILEHTLFKGTYFPTWEGLFW
EKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMH
GKIPTLKISLIQIFRAHLWQKIHESVVMDLCQVLDQELDALEIETVQKETIHPRKSYKMN
SSCADILLFAAHRWPMSKPSLVAESKDVFDQKASNKYWIDVQLRWGDYDSHDIERYARAK
FMDYTTDNMSIYPAPTGVMIGLDLAYNLHSAFGNWFPGSKPLLAQAMNKIIKSNPALYVL
RERIRKGLQLYSSEPTEPYLSSQNYGEIFSSQIKWFVDDTNVYRVTIHRTFEGNLTTKPI
NGAIFIFNPRTGQLFLKVIHTSVWAGQKRLGQLAKWKTAEEVAALVRSLPVEEQPKQIIV
TRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKIDKFGDLILKATEPQMVLFNIYDDW
LKTISSYTAFSRLILILRALHVNNEKAKMLLKPDKTVITQPHHIWPSLTDDEWMKVEVAL
RDLILSDYSKKNNVNTSALTQSEIRDIILGAEIAPPSQQRQQMAEIEKQAKEDSRLTAVT
SRTTNVHGDELIVTTTSPYEQQAFGSKTDWRVRAISAANLHLRVSHIYVNSDDAKETGYT
YIIPKNVLKKFIGIADLRTQISGYLYGLSPQDNPRVKEIRCIVMPPQWGTHQQVHLPSAL
PEHDVLNDLEPLGWMHTQPNELPQLSPQDVTAHARILENNKQWDGEKCIILTCSFTPGSC
SLTAYKLTPSGYEWGRVNKDTGSNPHGYLPTHYEKVQMLLSDRFLGFYMVPDDGPWNYNF
MGVKHTVSMRYGVKLGNARDYYHEDHRPTHFLEFTNLEEVGAAEADREDAFS
NT seq
6999 nt
NT seq
+upstream
nt +downstream
nt
atgatgccggggcctcggatggcccctcccccgccagcggtgcagccgcctaacagcata
ccgccctcgccaggggagctggaggcgcagctggtggagaaggcgaggaagtggcagcag
ctcaacgccaagcgatatggggagaagaggaagtttgggttcgtcgagacacagaaggag
gatatgccaccggagcacgtcagaaagataatcagagatcatggagatatgtcgtcgaag
aaacatcggtatgataaacgcgtatacctaggagctttgaagttcgttcctcatgcagtt
tacaagcttctcgagaatatgcctatgccgtgggagcaggttcgcaatgtgaaagtcctg
tatcatacaactggtgcaatcacgttcgtgaatgagatcccatgggtggctgaacctata
tacctggcgcagtggggttcgatgtggatcatgatgcgaagggagaaaagagaccgaaga
cactttaaaagaatgcgtttcccacctttcgatgatgaggagcctccgttagactacgct
gacaatttgttagatgtggaacccctggaggctattcagatagaattggacgacgaagaa
gatgctgttgtgtactcgtggttctatgatcataaacctctagtgaaaacgaagcttata
aatggtcctagttacagaaggtggcatctttcgcttcccataatggcaaatcttcatcgg
cttgctgggcagctactctctgatctgatcgaccgcaattacttttacttgttcgatatg
gagtcgttcttcactgccaaagcgctaaacgtgtgcatacctggaggtcccaagtttgag
ccattgtatcgtgatacggagaagggagacgaagactggaatgaatttaacgatatcaat
aagcttataattcgtcagccactaagaaccgagtataggatagcattccctcatctgtac
aacaacaggccaaggaaagttaagctcagcccgtatcacggccccatgataatgtacata
aaagccgaggatcctgatttgcctgtgttttacttcgatcctttaataaatcccatctct
tggaaaaaagttcaacacgagaatgatgaggaagattttttccttccccaaggagtcgaa
cctctcctgcacgagactccaatatataccgacacaacagcagccggtatctcattgcta
tttgcgccacacccatttaatatgagatctggtcgaacaagacgagctgaagatatagct
cttgtgtcggaatggtacaaggagcattgtcctccatcctacccggttaaagttcgtgtc
agttatcagaagttgttgaaatgttttgtattgaacgagttgcatcatcgacctcccaag
gcgcacaagaagaaacacttattccggtcacttcaggcaactaaattcttccaaacgaca
caactagactgggtggaggcagggctgcaagtctgtcagcaaggttacaatatgctgaat
ctgttgattcatcggaaaagtcttaattatcttcaccttgattataatttcaatttaaag
cctgtgaaaacacttaccacaaaggagcgaaagaagtcgcggttcggcaatgcctttcat
ctgtgtcgggagatactccgtctgacgaagcttgtcgtcgatgccaacgtccaattccgc
ctgggaaacgtcgacgcttttcaattagctgatggcctgcactatattttctctcatgtc
ggccagttgaccggtatgtatcgttacaagtaccgtctcatgcggcagattagaatgtgt
aaagatttgaagcatttgatttactatcgtttcaatactggtcctgttgggaagggacct
ggctgtgggttttgggcacccacgtggagggtgtggttgttcttccttcgtgggattgtg
ccgctgctagaaagatggttggccaatttactcgcacgtcagttccagggtcgtcattct
aaaggagttgccaagacagttacgaagcaacgtgtcgaaagccactttgatttggagctc
cgggctgctgtgatgcatgatattcttgatgcgatgcctgagggtattaggcagaacaag
gcgaggactatcttgcaacatcttagtgaagcgtggcgctgttggaaagccaacatacca
tggaaggtcccggcacttgcagtgccgattgagaatacgatactccgctacgtaaaatcc
aaggcggactggtggacgaatgtcgctcactacaatcgggaacgtatcagaaggggtgca
actgtggataagaccgtttgtcgaaaaaatctaggaagattaactcgtttaattttaaag
gccgagaaggaaaggcaacacaactacttgaaagatggtccgtacatcaccccggaagaa
gctgtggtcatctacaccacgacagcccattggctggaatcaaggaagttttctcctata
ccgtttccaccactgtggtacaaacatgacaccaaacttctcgtgcttgcactagagagg
ctgaaggagtcttacagtgtggcagtgagactgaatcaatcacaaagggaagaattgggt
cttatcgaacaagcatacgacaaccctcacgaggctctatccaggataaaacgtcacttg
tcaagccagcgtgtcttcaaggaggtcggcatcgagtttatggatctgtacagtcatctg
cttcctgtttatgagattgaacctctcgagaaaatcacagatgcgtaccttgatcagtat
ttgtggtacgaaggtgacagacgacaactgttccctaattgggtcaagcctgcggattcc
gaaccgcctcctctgctggtgtacaaatggtgtcaaggtataaataacttgcaagcgata
tgggatgcaagtgatggccagtgcgtggtggtgttgcaaacaaagtttgagaagctcttg
gagaaaattgatttgatcttgcttaagaggcttttatgtttggttctcgaaccatcactt
gctgagtatattactggtaaaaacaatgtcgttttgtcatacaaggatatgagccatacg
aacagctacggtctcattcccggtctgcaattcgcctcctttgttgtgcaatattatggg
cttgtgcttgatctgttgcttcttggtttgacccgagccactgaaattgctggtccttct
cggatgcccaatgaattcattacttatgcagacaccagagttgagaccaggcatcccatt
cgattgtattcccgttacattgatagagtacacatgttgtttcgtttctctcgtgaagag
gcacgtgacctaattcagcggtatcttatcgaacatcccgatccaaacaacgagaatatg
gttgggtataacaataacaagtgttggccaagagatgcaagaatgaggctgatgaaacat
gatgtgaacctcggacgaagtgtgttttgggatatgaagaatcgactacctccaagtatc
acgacattggaatgggaaaacagctttgtttctgtttatagcaaggacaatccaaatctt
cttttcagcatgtgtggatttgaggttcggatattgcctaaagtacgaatggctccggag
gctgctttcggtaacacagaagatggagtgtggaacctgcaaaatgagcaaaccaaagag
agaacagcgatggctttcttgcgtgtcgatgacgaacaactgaaggtgtttgagaatcgt
gtacggcagatccttatgtcttcaggatctaccactttcactaagattgttaacaaatgg
aatacggctcttattggtcttatgacgtatttccgagaagcaaccgtgcacacgcaggag
ttgctggatttgctggtcaagtgtgaaaacaagatacagacccgtattaaaatcggatta
aattcaaagatgcctagcagatttcctcctgtcattttttacacgccaaaggagattgga
ggccttggcatgttgtctatgggtcacgtattgatcccacagagtgacctgcggtatagc
cagcaaacagatgttggagtgacacatttcaggagtggtatgagtcatgaggaagatcaa
cttattcccaatctttaccgttacatacagccctgggagagtgagtttatcgattcacag
cgtgtttgggctgaatacgcatcgaagagacaggaagcagggtcacaaaatagacggctg
acactcgaggatctagaggattcctgggacaggggcatacctcgaatcaacaccctcttc
cagaaagaccgccatactctggcgtatgacaagggatggagagttcgtaccgaatttaac
aagtatcaagttttgaagcagaatccattttggtggacccaccaacggcatgatggaaag
ctttggaacttgaacaattaccggaccgacgtgatccaagcgctgggaggcgtcgaagga
attctggaacatacattgtttaaaggcacatatttcccgacatgggagggtctcttctgg
gagaaggcatctggattcgaggagtccatgaagtacaagaaacttacaaacgcgcaacga
tcgggtctaaatcaaattccaaaccgcaggtttaccttgtggtggtctcccaccataaat
cgtgcaaacgtgtatgtgggcttccaggtgcagcttgatctgacgggaatatttatgcac
ggaaaaattcctactttgaagatatctttgatccagatatttcgtgctcatctttggcaa
aagattcatgagagtgttgtcatggacctttgtcaagttttggatcaagagttggatgca
ctggagattgagacggtgcaaaaagagactatacacccaagaaaaagttacaagatgaac
agttcctgtgctgatattcttctctttgctgcacatagatggcccatgtccaagccaagc
ctggttgccgagtcaaaggatgttttcgatcaaaaagcaagcaataaatactggatcgat
gtgcaacttcgttggggggactatgattcccatgacatagaacgttatgctagggccaag
ttcatggattacacaacggacaacatgtccatatatccggcacccactggcgtcatgatc
ggattagatttggcatataaccttcactcagccttcggcaattggttccctgggtcgaag
cctttattggctcaagcaatgaacaagattataaagtcaaatccggcattatatgtcctg
agggagcgcataaggaaaggtctacagttgtactcatccgagccaaccgagccttatctt
tcgtcacaaaactacggagaaattttcagcagccaaattaaatggtttgtcgacgacact
aatgtgtatagagtaacaatacatcgaactttcgagggaaatctcaccactaagcccata
aatggcgccatctttatattcaatccgagaacaggacagctatttctcaaggtcatccat
acgagcgtgtgggcagggcagaaacggctgggtcagctggccaagtggaaaaccgcagaa
gaagtagctgctcttgtgcggtcattgccagtggaagagcaaccaaaacaaatcatcgtc
actcgcaaaggaatgctggatcctctagaggtccatttgctcgatttccccaacatcgta
atcaaggggagtgagctacagttgcctttccaggcttgcttgaagatcgacaagtttggt
gatctgattttaaaggctaccgaacctcagatggttctatttaatatctacgatgattgg
ctgaagactatctcgtcgtacactgccttctcccgtctcatactgatactgcgggcgctg
cacgtgaacaatgagaaagcaaagatgttactgaagcctgacaagaccgtcatcacccaa
cctcaccatatctggccttctctaacggacgatgagtggatgaaggtggaagtcgcactg
agagacctcattctttcagactactccaagaagaataatgtgaatacatctgcgctaaca
cagtctgaaatccgtgacataatactcggtgcggagattgctccaccctcgcagcagaga
caacagatggccgaaatcgagaaacaggccaaagaagatagtcggttaacagcggttaca
tcaagaacgacgaacgtccatggcgatgagcttatagtcaccacaactagtccatacgag
cagcaagcattcggttccaagaccgactggcgcgtgagagctatctcagctgcaaatctt
catctccgtgttagtcacatctatgtgaactcagacgacgcaaaggagacgggatacact
tacatcatccctaagaacgtcttgaagaagtttattggcatagcagatttgagaactcag
atttctggttacctttatggtttgagtccccaggataacccacgggtgaaggagatccgc
tgcatagttatgccaccgcaatgggggactcaccagcaggtgcatctgccgtcggctcta
cccgagcacgacgttctaaacgacctagaaccattgggatggatgcatacgcagcccaac
gagcttcctcagctatctccacaggatgtgactgctcatgcacggattctcgagaacaat
aagcagtgggacggcgagaaatgcattattttgacctgcagcttcactccaggatcctgc
tcgttgactgcctacaagctgaccccatccggttacgaatggggtcgtgttaacaaggat
accgggagcaatccccacggttatctaccaacgcattacgagaaagtgcagatgcttctc
agtgaccgcttcctgggcttctacatggtcccggacgatggcccttggaattacaacttc
atgggagtcaagcatacggtaagcatgcgatacggcgtgaagctaggaaacgcgagggac
tactaccatgaggatcaccggccgacgcacttcctggagttcactaatctggaagaggtg
ggcgcagcagaggcagacagggaggatgccttctcgtag
DBGET
integrated database retrieval system
