Musa acuminata (dessert banana): 135616731
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Entry
135616731 CDS
T03447
Name
(RefSeq) polyadenylate-binding protein 2-like
KO
K13126
polyadenylate-binding protein
Organism
mus
Musa acuminata (dessert banana)
Pathway
mus03015
mRNA surveillance pathway
mus03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mus00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
135616731
09123 Folding, sorting and degradation
03018 RNA degradation
135616731
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mus03019
]
135616731
03041 Spliceosome [BR:
mus03041
]
135616731
Messenger RNA biogenesis [BR:
mus03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
135616731
mRNA cycle factors
Stress granule specific factors
135616731
Spliceosome [BR:
mus03041
]
Complex C
Other components
Complex C specific factors
135616731
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_occluded
RRM_10
RBD_DEAH11
RRM_7
RRM_Nup35
RRM_MARF1
RRM_RdRP1_2
NSRP1_N
Motif
Other DBs
NCBI-GeneID:
135616731
NCBI-ProteinID:
XP_064972314
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All DBs
Position
BXJ2-7:4165639..4175575
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AA seq
645 aa
AA seq
DB search
MAQIQLQPQAVSGPAAGGGGVQFPSTSLYVGDLDSGVTDAQLYDIFSQIGQVVSVRVCRD
INTRRSLGYAYVNYNDPADAARAIEVLNFTPLNGKTIRIMISNRDPSTRRSGTANIFIKN
LDKSIDNKALYDTFSAFGNILSCKVATDASGASKGYGFVQFEQEEAAQNAIEKLNGMLLN
DKKVFVGPFVRKQERENAAGNTKFNNVFVKNLSESMTEDTLQEVFGEFGNITSCIVMREG
DGKSKCFGFVNFENPDDAAQAVQELDGKKFDDKEWYVGKAQKKSEREQELKERFEQSKQE
ATEKSQGVNLYLKNLDDSIGDDNLRDLFSGFGAIASCKIMRDKNGASKGSAFVAFQSPED
ASRALSEMNGKMIGNKPLYVAPAQRKEDRRARLQAQFSQMRPVAMPPSVAPRVPLYPPGG
PGLGQPLFYGQPPALVPPQPAFGFQQPLVPGMRPGPFPNFYMQMAQQGQQQVQRPGSRRA
GGGGPVQQTQQHPMQMIQQQMLPRGGRPYRYPPGRGMPEVPVSGIHGGMFSLPYDMGGGM
PQPTVPIGELTSALANATLEQQRTMLGESLYPLVDQLEHDYSAKVTGMLLEMDQTEVLHL
LESPEALKAKVAEAMEVLRSVAQQHHQVVSPTDRLAALTLNDVVS
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagatccagcttcagccccaggcggtctctggcccggcggcgggcggtggtggg
gtccagttcccatcgacgtccttgtacgtcggggacttggactcgggcgtgactgacgcg
cagctgtatgatatttttagccagatcgggcaggtggtgtcggtccgtgtatgccgcgat
atcaacactcgccgctccctcggttacgcctacgtcaactacaacgatccggcggatgcg
gcaagggcaatagaagtgcttaattttacacctcttaatggaaagactattcggataatg
atttcaaatcgtgaccccagcacacgtagaagtgggactgccaacatatttattaagaat
ttggacaagtctatagacaacaaagcactgtatgatacattttctgcattcgggaacatt
ctttcttgcaaagttgcaacagatgcatcaggtgcgtcaaagggctatggctttgttcag
tttgaacaagaggaggcagcacaaaatgcaattgagaagctaaatggcatgctattgaat
gataagaaagtttttgttgggccctttgttcgcaaacaagaaagagagaatgctgcaggc
aacacaaaatttaataatgtttttgtaaaaaatctctcggaatcaatgacagaggatact
ttacaagaagtttttggtgaatttggaaatatcactagctgtatcgtaatgagggaggga
gatggaaaatcgaaatgctttggctttgtcaattttgagaatcctgacgatgctgctcag
gctgttcaggaacttgatgggaagaaatttgatgataaggaatggtatgttggaaaagca
caaaaaaaatctgaaagagaacaggaactaaaagagagatttgaacagagtaagcaagag
gccactgaaaaatctcaaggggttaacttatacttgaagaacttggatgatagcattggg
gatgataatctgagggacctattctctgggtttggggcaattgcttcttgcaagattatg
cgtgacaagaatggtgcgagtaagggatctgcatttgttgcttttcagtctcctgaagat
gcatctcgagctctctcggagatgaatggcaagatgattggcaataaacctctttatgtt
gctcctgcacaacgcaaagaagataggagagcaagattgcaggctcagttttcacaaatg
cgtcctgtggcaatgccaccttcagttgctcctcgtgttccattatatcctcctggtggt
cctggattaggacaaccacttttctatggtcaaccaccagcacttgttcctcctcagcct
gcatttggattccagcagccacttgttcctgggatgagacctggacccttccccaatttc
tatatgcagatggctcaacaaggtcagcagcaggttcaacgccctgggagtagacgtgca
ggaggaggtggtccggtgcagcagacgcagcagcaccccatgcaaatgattcagcagcag
atgctcccaaggggcggacgtccctaccgctacccacctggccgcggcatgccggaggtt
cctgtgtctggtattcatggcggtatgttctctctcccatacgacatgggtggtgggatg
cctcagcccactgttcctattggagaattgacttcagctctggcaaatgcaacactggag
cagcagagaacgatgctgggggagagtctatacccacttgtggatcagctagagcatgac
tactcggcaaaggtaactggcatgctccttgagatggaccaaactgaagtgttgcatctg
ctggaatcccccgaggctttgaaggccaaagtagcggaggctatggaggttttgaggagt
gtcgctcagcagcaccaccaggtggtttcgcccaccgataggttggccgccctgacactg
aatgatgtggtctcttga
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