KEGG   Musa acuminata (dessert banana): 135616777
Entry
135616777         CDS       T03447                                 
Name
(RefSeq) THO complex subunit 3
  KO
K12880  THO complex subunit 3
Organism
mus  Musa acuminata (dessert banana)
Pathway
mus03013  Nucleocytoplasmic transport
mus03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:mus00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    135616777
  09122 Translation
   03013 Nucleocytoplasmic transport
    135616777
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mus03019]
    135616777
   03041 Spliceosome [BR:mus03041]
    135616777
Messenger RNA biogenesis [BR:mus03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     135616777
Spliceosome [BR:mus03041]
 Complex C
  Other components
   EJC/TREX
    135616777
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    135616777
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_IFT122_1st Beta-prop_WDR5 WD40_CDC20-Fz WD40 WD40_Prp19 WD40_WDHD1_1st Beta-prop_WDR3_1st Beta-prop_EML_2 ANAPC4_WD40 EIF3I Beta-prop_CAF1B_HIR1 WD40_Gbeta Beta-prop_WDR3_2nd WDR55 Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR19_1st Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_NOL10_N Beta-prop_RIG_2nd Beta-prop_Aladin Beta-prop_TEP1_C Beta-prop_Vps41 Beta-prop_WDR90_POC16_2nd eIF2A Beta-prop_IFT140_1st Beta-prop_WDR75_1st WD40_MABP1-WDR62_2nd Beta-prop_EML DSE1_N WD40_RFWD3 Beta-prop_WDR35_TULP_N Beta-prop_HPS5 Beta-prop_EIPR1 WD40_MABP1-WDR62_1st Beta-prop_DCAF12 Tricorn_2nd TRM82_WD WDR90_beta-prop_4th B-prop_COPA_B_2nd Beta-prop_IFT80_2nd DUF7099 Beta-prop_WDR41 Beta-prop_ACSF4 Me-amine-dh_H CNH Beta-prop_WDR11_1st
Other DBs
NCBI-GeneID: 135616777
NCBI-ProteinID: XP_064972418
LinkDB
Position
BXJ2-7:4688148..4693140
AA seq 314 aa
MEERAISFKNLCSREYQGHKKKVHSVAWNCLGTKLASGSVDHTARIWNIDPHGHGKVKDI
ELKGHTDSVDQLCWDPKHPDVVATAAGDKTVRFWDARSGKCTQNVELSGENINITYKPDG
THIAVGNKEDELTILDVRKYKPIHRRKFNYEVNEIAWNTTGELFFLTTGNGTVEVLAYPS
LKVLHTLMAHTAGCYCIAIDPLGRYFAVGSADSLVSLWNVSDILCIRTFTKLEWPVRTIS
FNYTGEYIASASEDLFVDISNVQSGRSVHQIPCKAPMNSVEWNPKYNLLAYAGDDKNKYQ
ADDGVFRIFGFESS
NT seq 945 nt   +upstreamnt  +downstreamnt
atggaagagagagccatcagcttcaaaaatctgtgctccagagagtaccaaggccacaaa
aagaaggttcattcggtggcgtggaattgtctggggacgaagcttgcttccggttctgtt
gatcacactgctcgtatttggaacatcgatccccatggccacggcaaggtcaaagatatt
gaattaaaagggcatacagacagtgtagatcagctatgctgggatcctaagcatcctgat
gtggttgcaacagcagcaggggacaagactgttcgtttttgggatgcccgaagtggaaaa
tgcactcaaaatgttgagcttagtggagaaaacatcaatatcacttacaaacctgatggg
actcacatagctgttggaaataaggaggatgagctaacaatactggacgtccggaaatat
aagccaatacacagacgcaaatttaattatgaggtaaatgagatagcttggaacacaact
ggagagctattttttcttactactgggaatggtactgttgaagtactggcatacccatcc
cttaaggtgcttcacaccctgatggctcatactgcaggttgctattgcattgcaattgat
ccacttggaagatacttcgctgtagggagtgcagattcactcgtcagcctttggaatgtc
tcagatattttgtgcatcaggacattcacaaaacttgaatggcctgtcagaaccatcagc
tttaattatacaggagaatacattgcctcagcaagtgaagatctgtttgttgatatttca
aatgtccaaagtggccgatcagttcatcaaatcccatgtaaggctccgatgaacagtgtg
gagtggaacccaaaatacaacctgctggcatatgcaggagatgacaagaacaaatatcag
gctgacgatggtgttttccgaatttttggttttgagagcagctaa

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