Musa acuminata (dessert banana): 135618034
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Entry
135618034 CDS
T03447
Name
(RefSeq) LOW QUALITY PROTEIN: SNF2 domain-containing protein CLASSY 4-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
mus
Musa acuminata (dessert banana)
Pathway
mus03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mus00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
135618034
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mus03400
]
135618034
DNA repair and recombination proteins [BR:
mus03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
135618034
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
135618034
NCBI-ProteinID:
XP_064975008
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All DBs
Position
BXJ2-7:5176637..5181450
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AA seq
1225 aa
AA seq
DB search
MASVARRTRTTRALNGDKNSDANSSLRSTAGCGGRGGDALASRTRVKTQCDKPDVILLDD
EEEVVVVGEGGGGRRTGGGIRGRRVEGRQNREETVRWVRDSVHFSESLVSSSSQNAVFFD
VESDENESESSVQGSLRSGSFSNEGKAGSWGNSESRLHAGQAEIGKIHEIDGSREELEAE
SNGHSIPVGSEEEKEDDTYEDREPSKADVEVEADDSSSQKVIQLDCEDGNETEEDMALDD
VEKDWGSSVKNDELSGQRDVKESDEDGAKAKEELTTDSCVAKRTRSSVGKQQRVSYVQYF
EEDESDDDDADGEASQEDVPYDHTNELAAESMRSTFEGRTNGCKENGRCSASLLKKRRFS
VTNIPLSVSNTETSTGGPASRGGFGISVRTQSHFDSKLDEKENKPGIATETFCLDVDESD
ELFGLNKEDKKGGENGTDGGEREGIKLEGFRVGKFQKRERDRPLKHSGIKICLDAFFSHT
EKLPVDSFPPKNEPYCEEPDFFSFEVPKGVEKSDSEKAMDELWADFEFAMGLENIGTYNA
DKVXEEFDTQEPEYDPLTSCCEGKHCFILDEQTGIKCKFCSFVQLEIRYIFPSLETNTWE
KSEWKCCSSESGQLHFNDLCETLTKLNGQASHSHLCGTVWDLIPGVYTTMYEHQQEAFEF
MWRNLAGGIHLDELKSGSGSDVLGGCVISHAPGTGKTRLSIVFIQTYMKVFPECRPVIIA
PSGMLLTWEEEARKWDVSIPIHNLNSLEYNGKEDKEALSLAEKEPQRSNLIRLVKLCSWG
RGNSILGISYNLFKQLTSKASTGLSKILLEKPGLLVLDEGHIPRNERSLIWKVLGKVKTE
KRIILSGTPFQNNFVELYNILCLVRPKFAEKISNKTLKSCRRQEIFLDKEQAILAGESGG
KGIWATLTSDVTNDNVEEVRSILKPFVHVHNGSILKNLPGLRECLIVLDPLPQQKCIIEK
IKCIGSHGNFEREYKVCLASIHPSLVTHLNMSEEEESLVDTNLLEKLKLSPVEGAKTRFV
IEVVRLCDPLNEKVLIFSQYIQPLVMIKEQLINEFGWNDGKEVLQMDGKILTKNRQPSID
IFNDTKGKAKVLLASTKACCEGISLTGASRVILLDVVWNPAVGRQAISRAYRIGQKKFVY
AYNLITFGTGEREKYDKQSKKDLLSKLLFSPEIDFNNIRNSISQSEEGHFPKIISEDKIL
EQIVERLKIMFVDIYYPPKEYCICA
NT seq
3678 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccgtcgcgcggaggacgcggactacccgagccctgaacggggataagaactcc
gatgccaattcctccctccgttcaaccgccggctgcggcggtcgtggaggagatgcccta
gcttccagaaccagggtcaagacccagtgcgacaagccggatgtcattctccttgatgat
gaggaggaggtggtggtggtgggagagggaggaggaggacggcggacaggaggagggata
agaggacggcgagtagaaggccgtcagaatcgcgaggagacggttcgttgggttagagac
tccgtgcatttttcggagtctcttgtgtcctcctcgtcgcagaacgccgtcttctttgat
gtggaaagcgatgaaaatgagagtgagagctctgtccagggttccctgaggtcgggatca
ttttctaacgaggggaaagcgggctcctggggcaactcagaatccagattgcatgctgga
caagctgagatagggaaaattcatgaaatcgacggttccagagaggagttggaagctgaa
tccaatggacatagcattccagttggaagtgaggaagaaaaggaagacgacacttatgaa
gatagagaaccttccaaagctgatgtagaagttgaagctgatgattcttccagtcaaaag
gttatccaactcgattgtgaagatggcaatgaaacggaagaagatatggcgctcgatgat
gtcgaaaaggattggggatcttcggtcaaaaatgacgagctttctggacagagagacgtt
aaggaatcagatgaagatggtgcgaaagctaaagaagaattgacgactgattcttgtgtc
gcaaagaggactcgatcatctgtgggaaagcagcagagagtttcatatgttcaatatttt
gaagaggatgagtcagatgatgatgacgcagacggggaagcatcgcaggaagatgtgcca
tatgatcataccaatgaactcgctgccgaaagcatgaggagtacatttgaaggcagaacc
aatgggtgcaaggagaatggtaggtgttctgcgtctttgctgaagaagagaaggttctca
gttaccaacatccctctgtcagttagcaacactgaaactagcactggtggccctgcgagc
cgtggtggctttggcatttcagttcgcacccagtcacattttgattcaaagcttgatgag
aaggaaaacaagcctgggatcgctactgagacattttgtctagatgtggatgaatctgat
gagctttttggcttaaataaagaggataagaagggtggtgaaaatggaaccgatggtggt
gagagagaagggatcaaactggagggattccgtgttggaaaattccaaaagagagagcgg
gataggccattaaaacattctggtatcaaaatctgtcttgatgcatttttcagccacaca
gaaaagcttccggttgattcctttcctcccaagaatgagccatactgtgaggaacctgac
tttttctcttttgaagtaccaaaaggagttgagaaatctgactctgaaaaagcaatggat
gaactgtgggctgattttgaattcgctatgggcttagagaacattggcacttacaatgct
gataaggtatgagaagaattcgacacacaggagccagaatatgatccattaacttcatgc
tgtgaagggaaacattgttttatcctcgatgaacaaacaggaatcaaatgcaagttctgc
tcttttgttcagctggagatcagatacatttttccatctttggaaacaaacacttgggag
aagtctgagtggaaatgttgcagcagtgagagtggccaactgcattttaacgacctttgt
gagacattgacgaagttaaatggacaagcttctcatagtcatttatgtggaactgtgtgg
gatctcattccaggtgtctatacaactatgtatgagcatcagcaggaagcatttgaattt
atgtggagaaatctagctggggggattcaccttgatgagttaaagtcgggttctggatct
gatgtgcttggtggttgtgtgatttctcatgcccctggaacaggaaagacccgtttatcc
attgtttttattcaaacttacatgaaggttttcccagaatgtaggcctgtgattattgct
cccagtggaatgctccttacatgggaagaagaagccagaaaatgggatgtcagtatacct
atccataatttgaattctttggaatacaatgggaaggaagataaagaggcactttccctg
gcagagaaagaacctcaaagaagcaatctgatacgtcttgtgaaactctgttcatggggc
agaggcaatagtatccttggaataagctataatttgttcaagcaactaacatccaaggct
tcaactggtttaagtaagatccttcttgagaagccaggtttgcttgttcttgatgagggc
catattcctagaaatgaacggagtcttatatggaaggtattaggaaaagtcaaaactgag
aagcgtatcatcctttctggaactccttttcagaataattttgttgagctttacaatatt
ttgtgtctggtaagacctaagtttgctgaaaagatctcgaataaaacattgaaatcctgt
aggaggcaagagattttcttagacaaggaacaagctatcctagcaggagaaagtggggga
aaaggaatatgggctactctaactagtgatgttaccaatgacaatgttgaggaagtccga
tcaatattaaaaccttttgtgcatgttcataatggtagcatccttaaaaatcttccaggt
ttgagggagtgtttaattgttttggatcccctgcctcagcagaaatgcattattgagaaa
ataaagtgcattgggtcacatggcaacttcgagagggaatataaggtatgcttagcttcc
attcatccttcacttgtgactcatctgaacatgtctgaggaagaagaatctctggtcgat
actaatttgctagaaaaactgaaattgagcccagttgagggtgcaaaaacacgattcgtc
atagaagttgttcggttgtgtgacccactcaatgagaaggtgttgatcttcagtcagtat
atacagccattggttatgatcaaagaacaactaattaacgaatttggttggaatgacgga
aaggaggtgttacagatggatggaaagattctcacaaaaaatcgtcaaccttcaatagat
atttttaatgatacaaaaggcaaagcaaaagtgctacttgcctcaaccaaggcttgctgt
gaagggataagcttgacaggggcatcaagggttatactgctggatgttgtttggaaccca
gcagtaggtaggcaagcaatcagcagagcttatagaattggacaaaagaaatttgtatac
gcatacaatttgatcacatttggaacaggtgaaagagaaaagtacgataagcaatccaaa
aaagatctcttgtctaaattgctcttctccccggaaattgatttcaataatatcagaaac
agtatctcacagtcagaggagggacactttcccaaaattatctctgaagataagattttg
gaacagatagttgaaagactgaaaattatgtttgttgacatctactacccaccaaaggag
tactgtatatgcgcatag
DBGET
integrated database retrieval system
