Musa acuminata (dessert banana): 135619114
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Entry
135619114 CDS
T03447
Name
(RefSeq) pre-mRNA-processing factor 19-like
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
mus
Musa acuminata (dessert banana)
Pathway
mus03040
Spliceosome
mus04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
mus00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135619114
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
135619114
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mus03041
]
135619114
04121 Ubiquitin system [BR:
mus04121
]
135619114
03400 DNA repair and recombination proteins [BR:
mus03400
]
135619114
Enzymes [BR:
mus01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
135619114
Spliceosome [BR:
mus03041
]
Complex B
Other components
Prp19 complex
135619114
Complex C
Prp19-CDC5 complex
135619114
Ubiquitin system [BR:
mus04121
]
Ubiquitin ligases (E3)
U-box type E3
135619114
DNA repair and recombination proteins [BR:
mus03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
135619114
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
WD40_MABP1-WDR62_2nd
WDR55
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_HPS5
Beta-prop_WDR19_1st
Beta-prop_TEP1_C
Beta-prop_EML
Beta-prop_IFT140_1st
Beta-prop_WDR75_1st
Beta-prop_Vps41
Beta-prop_SCAP
U-box
Beta-prop_EIPR1
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_DCAF12
NBCH_WD40
Beta-prop_DCAF4
PEP5_VPS11_N
WD40_like
Beta-prop_RIG_2nd
KNTC1_N
zf-Nse
PAS_11
PUMA_CC
Motif
Other DBs
NCBI-GeneID:
135619114
NCBI-ProteinID:
XP_064976860
LinkDB
All DBs
Position
BXJ2-8:9689465..9701941
Genome browser
AA seq
526 aa
AA seq
DB search
MICAISGEVPEDPVLSKKSGLLFERRLIEHHIASHGKCPITKEELTMDDLIPVKTNKVVK
PRPLQAASIPGLLGMFQNEWDALMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKK
ERDEARMLLAQAERQIPLLAASAANATTAVSNGKRAAEDDLGPDGKKIRPGINPVIIAEL
TECNALLSGQRKKRQIPTTLASVDALERYTQISSHPLHKTNKPGILSIDIDASKDIIATG
GIDTNGVLFNRASGQMLSTLSGHSKKVTSVKFVPGNELIVTGSSDKTVRVWQGTENGNYD
CQHVMRDHTAEVQAVTVHATQKYFVTASMDNTWCFYDLSTGSCLTQVGEASTEEGYTSAS
FHPDGLILGTGTTGAIVKIWDVKSQSNVAKFDGHVGSVTAMSFSENGYFLATAAMDGVKL
WDLRKLRNFRSFAPYDPETPTNYVEFDSSGSYLAIAGSDVRVYQVANVKLEWNLIKILPD
LSGTGKVSCVKFGADAKYMAVGSMDRNLRIFGLPGDESEEPKSPDH
NT seq
1581 nt
NT seq
+upstream
nt +downstream
nt
atgatctgtgcgatctccggcgaagtgccggaggatccggtgctttccaagaaatctggg
ctactcttcgagcggcgattgattgagcatcatattgcgagtcatgggaaatgccccatc
actaaggaggagctcaccatggacgatcttatacccgtgaagacaaataaggtggtgaag
cccagacctctgcaagctgcaagcatccctgggttgctaggaatgtttcagaatgaatgg
gatgctttgatgttgtctaattttgcattagagcaacaattacacacagcaaggcaagag
ctaagtcatgccttgtatcagcatgatgctgcatgccgcgttattgcaagattgaagaag
gaaagggatgaagccagaatgcttttggctcaagctgagagacagattcctttgttagca
gcttctgctgccaatgcgacgactgctgtcagcaatgggaaaagagctgcagaggatgat
ttgggtcctgatgggaagaaaattcggcctggtattaatcctgttattattgcagaactt
acagaatgtaatgctttgctttctggacaacggaagaagcggcagataccaacaacacta
gcttcagttgatgcgctggagagatacactcagatctctagtcacccccttcacaagacc
aacaagccaggcattctttctattgatattgatgcttccaaggatataattgctacgggg
gggattgatacaaatggagtacttttcaatagggcatcaggccagatgttatctacactc
tctggccactcaaagaaggttaccagtgtgaaatttgtgcctggtaatgaactgattgta
actggatcaagtgataagactgttcgtgtttggcaagggactgaaaacgggaattatgat
tgccaacatgtcatgagggaccatactgctgaggtacaagctgtcactgtacatgctact
caaaagtactttgtgactgcttctatggataatacttggtgtttctatgacctttcaact
ggatcatgcctcactcaggttggcgaagcttcaacggaggagggctacacttcagcttcc
tttcatcctgatgggctcatccttggaacaggcaccactggagctattgttaaaatttgg
gatgtcaaatctcagtcaaatgttgcaaaatttgatgggcatgtgggatcggtgacagct
atgtcgttctccgagaatggttatttccttgcgactgcagctatggatggtgtgaagctt
tgggatcttaggaagctaaggaacttcagatcctttgctccctatgatccagagactcct
acaaactatgtggagtttgactcaagtgggagctatcttgctattgcgggctctgatgta
agggtgtaccaagttgccaatgtgaagctcgagtggaatcttatcaagatattgcctgat
ttatctggaacagggaaagtgtcgtgtgtgaagtttggagcagatgcaaaatacatggca
gtaggttccatggaccgaaatctccggatatttggactcccgggggatgaatcagaggag
ccaaaatccccagatcattaa
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integrated database retrieval system
