Musa acuminata (dessert banana): 135619793
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Entry
135619793 CDS
T03447
Name
(RefSeq) zinc finger CCCH domain-containing protein 40-like
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
mus
Musa acuminata (dessert banana)
Pathway
mus03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mus00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135619793
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mus03041
]
135619793
Spliceosome [BR:
mus03041
]
Complex B
Other components
Prp19-related factors
135619793
Complex C
135619793
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
RRM_1
zf-CCCH_RBM22
Torus
zf_CCCH_4
zf-CCCH_12
zf-CCCH_2
RRM_YTH1
zf-CCCH
zf-CCCH_3
RRM_occluded
RRM_3
Nup35_RRM_2
zf-CCCH_PARP12
zf-CCCH_4
Med4
Motif
Other DBs
NCBI-GeneID:
135619793
NCBI-ProteinID:
XP_064978207
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All DBs
Position
BXJ2-8:47273444..47278724
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AA seq
476 aa
AA seq
DB search
MAHRLLRDAQADGWERSDFPIICESCLGDNPYIRMTKADYDKECKICKRPFTVFRWRPGR
DARYKKTEICQTCCKLKNVCQVCVLDLEYGLPVQVRDTALAINSNDAIPKSDVNREYFAE
EHDRRARGGIDYESSYGKVLPNDTILKLQRTTPYYKRNRAHVCSFYLRGECTRGAECPYR
HEMPEIGELSQQNIKDRYYGVNDPVAQKLLSKAGEMPSLNPPEDESIKTLYVGGLDARIS
EQDLRDHFYAHGEIESIRMVLQRACAFVTYTTRDAAEKAAEELANKLVIKGLRLKLMWGR
PQASKPEGEAQDDDAGRQGVVTHAGLLPRAVISQQQSNHQPLPPGTENHQQPPLNYFNIP
APPQAARTFYPSTDPQRMGALVPTQEGSNNKSGSEKQPEQQAPNLHGHAFPMAPPHPQGS
QYRPPYYPPYGYMAPLPPPYQQYPPYPPMMAPRPPPPPPAPQPAVQQYTRGPPGPS
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaccggctgctgagggacgcgcaggccgacggatgggagcggtccgatttcccc
atcatctgcgagtcctgcctgggcgacaacccttacatccgaatgacaaaggctgattat
gacaaggaatgtaagatctgcaaacggcctttcaccgtcttcagatggaggcctggacgt
gatgcaaggtacaagaagacagagatctgccagacatgctgtaagctgaagaacgtctgc
caggtgtgtgtccttgatcttgaatatggtctaccagttcaagttcgggacactgccctc
gctatcaattctaatgatgccatcccaaagagtgatgtgaatagagagtattttgctgaa
gaacatgaccgcagggccagaggtggcatagattacgaatcttcgtatggaaaagtgctt
ccaaatgacaccatcttaaagcttcaaaggacaacaccatactataaaagaaatcgagcc
catgtttgtagtttctatttgcgtggtgaatgcactcgtggagctgaatgtccatatcga
catgagatgcctgaaattggtgaattatctcagcagaatataaaggatagatattatgga
gtgaatgaccctgttgctcagaagcttttaagcaaggctggtgagatgccttctctaaat
cccccagaagatgagagtataaagaccctatatgttggtggcctagatgcccgtatttcc
gagcaggatctgagggaccacttctatgcccatggtgagatcgaatccatcaggatggtg
ctccagcgagcatgtgcatttgtaacttacacaacaagagatgctgctgaaaaagctgca
gaggaacttgctaacaagcttgtcataaagggtctcagattaaagctgatgtggggaaga
ccacaggcctcaaaaccagagggagaggcacaggatgatgatgccggaagacagggtgtt
gtcacacatgccgggctgcttccaagggctgtcatatctcagcagcagagcaaccatcag
ccgctcccacctggcaccgagaaccaccagcagccacccctcaactacttcaacattccc
gcgccaccgcaagctgcacggacattctacccgtccaccgatcctcaaagaatgggcgcg
ctagtcccgacacaagaaggtagcaacaacaaaagcgggtcggagaagcagccagagcag
caagcaccaaatcttcacgggcatgcttttcccatggctcctccacatccccaagggagt
cagtaccggccgccatattatccaccatacgggtacatggccccactgccaccgccatat
cagcagtaccctccatacccaccgatgatggctccacgaccgccaccaccaccacctgca
ccacaacctgcagtgcagcagtacactcgaggccctcctggaccatcttag
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