Musa acuminata (dessert banana): 135620380
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Entry
135620380 CDS
T03447
Name
(RefSeq) probable CCR4-associated factor 1 homolog 11
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
mus
Musa acuminata (dessert banana)
Pathway
mus03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mus00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
135620380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mus03019
]
135620380
Messenger RNA biogenesis [BR:
mus03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
135620380
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
135620380
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
135620380
NCBI-ProteinID:
XP_064979382
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All DBs
Position
BXJ2-8:32043616..32044476
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AA seq
286 aa
AA seq
DB search
MSSQRGGRGGRQYLVVRSVWAWNLEYEFSIIASLVDRFSYVAFDTEFPGFLYRTRRPHRL
LPPSLRYALLKANVDKMELVQLGLTLFDAFGDLPDIGTGGRVGFVWEFNFREFDVRRDLH
APDSVDLLRSSGIDFDRLPLYGIDSGQFAAHLYRSGLVAHCRFCRPHSTRWIAFHSCYDF
AYLIKVLGFGRPLPDTLEEFLGLVNLLFGETVDLKHIMRGCKGLSGGLERVASTLGVPRQ
AGKSHQAGSDSLVTCQVYLKMKRRFFDDQDAKVACHRGIIYGLQAC
NT seq
861 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcgcaacgaggaggacgaggagggcggcaatatttggtggtgcgctcggtttgg
gcgtggaacttggagtacgagttctccatcattgcttccctcgtggatcgcttctcttac
gtcgccttcgacacggagtttcccggcttcctctacagaactcggaggccacaccgtctt
ctcccgcccagcctgcgctacgccctcctcaaggccaacgtcgacaagatggagctcgtc
caactcggcctcaccctcttcgacgccttcggcgacctccccgacatcggcaccggcggc
agggtcgggttcgtgtgggagttcaacttccgggaattcgatgtccgacgcgacctccac
gcgccggactccgtcgacctgctccgctccagtggcatcgacttcgaccggctccccctc
tacggcattgactccggccagttcgccgcccacctctatcgttccggcctcgtcgctcat
tgccgtttctgccgcccgcactccactcgatggatcgcctttcacagctgctacgacttc
gcctatctcatcaaggtgctggggttcggccggcctctgcccgacaccctggaagagttc
ctcggcctggtgaacttgctcttcggagagactgtggatctcaagcacattatgcgcggc
tgcaagggtctctccggcgggctggagagagtggcgagtaccctcggggtgccacgccaa
gctgggaagtcgcatcaagctggatcagatagcttggtgacctgccaagtctatctgaag
atgaagcggaggttcttcgacgaccaagacgccaaggtggcctgccatcgcggcatcatc
tacggcctacaagcctgctga
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