Musa acuminata (dessert banana): 135622315
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Entry
135622315 CDS
T03447
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
mus
Musa acuminata (dessert banana)
Pathway
mus03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mus00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
135622315
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mus03019
]
135622315
Enzymes [BR:
mus01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
135622315
Messenger RNA biogenesis [BR:
mus03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
135622315
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
NPHP3_hel
Motif
Other DBs
NCBI-GeneID:
135622315
NCBI-ProteinID:
XP_064980138
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All DBs
Position
BXJ2-9:1389086..1393435
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AA seq
609 aa
AA seq
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MAAGSGKQRWAGAVKQVTKSNFAAALQQLRIDVDSADFVAISCRKTGDSVASSRRHPWHR
VLPIDTPEVAYLKARLAAESYEILQFAVCPFRLRGYKVLAYPYNFHLFPRDEINLVAPSY
SFSCQTSFLTSMAQEGFDFNACIYDGISYLSRVQESIVKERNPIPQIQPVSSFSSLSVAD
SIFMSRIKSRVVHWWNVCKESSNTIDEDLIKSLRKLISGTELYGSRPSMSISVCSDRQVQ
LALQTVSHIHDNIVPLVVPDKSGGPKAVRIVLTSSEEDKNLLMTEIQNLENEQNLRVRGF
REVIDVISSSNKPVIGYNCLHDFTFIHSKFIAPLPPTLFEFMCSLRLVFTNIIDINYLSK
EIGPLRKAKNLPATLSYLKRQFFMPIDIELPPKAAEEKSNKAIHGNNVLQITYLFAALSA
LLKLNPDGQLPQGQNIMPIEDYSNIFYPICTSLQEPDDELNYLMEHAQKSSTGNLVFLWG
FSHLISSKELKRELQQIHEVFTEDFELQLMDETCAAVVFSRSGLAEALLMEMGSGKFCSD
ALSTKTSGLRAAGYDAYRKVCMSGLWEAYLADSLENILSGSTNSLSASSEKDSSEVYWRS
ESTIDLSDL
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atggccgccggcagcgggaagcagcggtgggccggcgccgtgaagcaggtcacgaagtcc
aacttcgccgccgccctacagcagctcaggatcgacgtggacagcgccgacttcgtcgcc
atctcctgccgcaagaccggcgactccgtcgcctcctcccgccgccacccgtggcaccgc
gtcctccccatcgacacccccgaggtcgcctacctcaaggccaggcttgcggccgagtcg
tacgagatcctccagtttgccgtctgccccttccgcctccgaggttacaaagtcctcgct
tacccgtacaactttcacttatttcctagggatgaaataaatttggttgcaccttcctat
tccttctcatgtcaaacttcattcctgacgtctatggctcaagaaggttttgattttaat
gcctgcatatatgatgggatttcatacttatcccgagtacaagaatctattgtcaaggaa
agaaatcccatccctcaaatacaaccagtatcatcgttttcaagcctctcagttgctgat
tcaatttttatgtccagaattaagtcaagagttgtgcactggtggaatgtttgtaaagaa
tcgagtaacacaattgatgaggatttgatcaagtccctgcgaaagctcatctcaggtact
gaactatatggttcgaggccttccatgagcatcagtgtctgcagtgatcgtcaagttcag
ttggctctgcagactgtcagtcatattcatgataacattgtacctctggttgttccagac
aaatctggaggacctaaggctgtacgtatagtgctgactagctcagaggaggataaaaat
cttctcatgaccgagattcaaaatcttgaaaatgagcagaacctgagagttcggggattc
cgggaagtgattgatgtgatttcctcttccaataaaccagtcattggttataactgtcta
catgatttcacatttattcactcaaagttcattgcccctttgcccccaactctctttgaa
tttatgtgctccttgaggttggtattcactaacataattgatatcaactatctgtctaag
gaaattggccctttgagaaaagcaaagaatctacctgccactcttagttacttgaagagg
caattctttatgcctattgatatcgaactccctccaaaagccgctgaagaaaagagcaac
aaggccattcatggaaataatgttctgcaaataacttatttatttgcagcactcagtgca
ttactaaaactgaatcctgatggtcaacttcctcaaggacagaacatcatgcccattgaa
gattattcaaatatcttttatcccatatgcactagcctacaggaacctgatgatgagctt
aattatctgatggaacatgcccagaaatcgagcactggtaacttagtgtttttgtgggga
tttagtcatttgatttcttctaaggagctaaaacgtgagctacaacaaattcatgaggtg
ttcacagaagatttcgagttacagttgatggatgagacttgtgcagctgttgtcttttcc
agatcaggtttggctgaggctttactgatggaaatgggatcaggaaagttttgttctgat
gctttgtcaacgaagacatcagggctgagagcagcagggtatgacgcttatcgaaaggtt
tgcatgtccggtctttgggaggcatacttggctgattccttggagaatatactgtccggg
tcaaccaatagtctgtcagcatcttccgagaaagattcatccgaggtttactggagaagt
gagtcaacaattgatctaagtgatctctag
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