Musa acuminata (dessert banana): 135622445
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Entry
135622445 CDS
T03447
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH11-like
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
mus
Musa acuminata (dessert banana)
Pathway
mus03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mus00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
135622445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mus03019
]
135622445
Enzymes [BR:
mus01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
135622445
Messenger RNA biogenesis [BR:
mus03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
135622445
mRNA degradation factors
3'-5' decay
Ski complex
135622445
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Ski2_N
Helicase_C
DEXQc_Suv3
ResIII
AAA_22
AAA_16
Motif
Other DBs
NCBI-GeneID:
135622445
NCBI-ProteinID:
XP_064980386
LinkDB
All DBs
Position
BXJ2-9:2575644..2595507
Genome browser
AA seq
1341 aa
AA seq
DB search
MERVEATNEVAFRVGFTGYSGHLRLEPLPPVQRPTPLSSLPDFILPPAFPPETPESLKEY
LEDNYLRPELDPDEFSVENSGRFWDFDWFGRAKVPLEPSAPRSVVAPSWELPFRRSKNTG
PSGIWNPSSVEVDVAELMEGAQNSGSMPRMPGPAKDFVRGSTNSRPFRPGGLDGSQALAR
NPPEGALSGEWVRKVLDGGPAETVPPSFKKGLDLGDLKKYPYHWTCTDQKISAAKKDLMD
DDLNMYSVQFDDLFKKAWEEDIIEGSIGDGSVQNEDEKEEINIDPLPESEISSDNMILSE
PGNMGDELPGQNIDSSKHQGEAWALVGGNDEIVSHFYELVPDMAIDFPFELDSFQKEAIY
HLERGESVFVAAHTSAGKTVVAEYAFALASKHCTRAVYTAPIKTISNQKYRDFCGKFDVG
LLTGDVSLKPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDAERGVVWEEVI
IMLPRHVNIILLSATVPNTIEFADWIGRTKQKKIRVTGTTKRPVPLEHCLFYSGELYKVC
ESDTFLPQGFRAVKDVYKRKKSSAGMGQSGTKVGVPFAQAGSQSRQHDSSSRGKIQKHSG
HQITHSSYGTSGMNHSHSGLRRSESSLWLSLVNKLSKNSLLPVVIFCFSKNRVDKSADNM
TGTDLTTSSEKSEIKVFCDKAFSRLKGSDRNLPQVVRVQNLLRRGIGVHHAGLLPIVKEV
VEMLFCRGVIKVLFSTETFAMGVNAPARTVVFDTLRKFDGKDFRRLLPGEYIQMAGRAGR
RGLDKIGTVIVMCRDEIPEESDLKQVMVGKPTRLESQFRLTYTMILHLLRVEELKVEDML
KRSFAEFHAQKNLPEKERLLLQKLRQSTKKIECIKGEPAIEEYFEMASEAETHRQHILEA
VLQSHTAQQFLSPGRVVVVKSQSAEDHLLGTVLKTPSAANKQYIILVLIADIASQAPSMS
SNKLQEEESQNFQQGYFITPKGKRSMDEEYFSSVSSRKGSGAINIKLPYYGSASGTNYKV
IAIDNKDIVSICNCKIKIDQVRLLEDPSNIAYSKTVQQLLEKKHDGNKYPPALDAVKDLK
LRDMDLVQRYHSYNKLLQNMAENKCHGCIKFNEHIMLIKEQNRHKEEVNALKYQMSDDAL
QQMPDFQGRIDVLKEIYCIDSDLVVQLKGRVACEMNSGEELICTECLFENQLDDLEAEEA
VAIMSSLVFQQKNTSEPSLTPKLAYAKRRLYDTAVRLGQLQSQFKLAIDPVEYARENLKF
GLVEVVYEWAKGTPFADICELTDVPEGLIVRTIVRLDETCREFKNAASIMGNSALYKKME
TASDAIKRDIVFAASLYVTGV
NT seq
4026 nt
NT seq
+upstream
nt +downstream
nt
atggagcgcgtcgaggcgaccaacgaggtcgccttccgggtagggtttaccggctacagc
ggccacctccggctcgagccgctcccgccggtccagcgccccacccccttgagttctctc
cccgatttcatcctcccgccggcttttcctccggaaacgcctgaaagcttgaaggagtat
ctggaggacaattaccttcgcccggagctggaccctgacgagttctccgtggagaactct
gggcggttttgggacttcgattggtttggccgggcgaaggtcccgctggagccgtcggcc
ccgcgttccgttgtggccccctcgtgggagttgccttttagacgttccaagaatacgggc
ccttcgggaatctggaatccctcttcggtggaggtagatgtggctgagctgatggaagga
gcccaaaattctggatcgatgccacgaatgcctggaccagcgaaggactttgtaaggggt
agcaccaacagtcgtccgttccgaccgggtggccttgatggttctcaagctttggcgagg
aaccctcctgaaggtgctcttagcggtgaatgggttcgcaaagttctcgatgggggtcct
gctgagactgttcctcctagctttaagaagggactggatttaggtgatcttaagaaatat
ccctaccattggacgtgcaccgatcagaaaatctctgcagcaaagaaggatttgatggat
gatgacttgaatatgtactcggtgcagtttgatgatttatttaaaaaggcttgggaggaa
gatattatcgaaggatcaataggagatggttctgtccaaaatgaagatgaaaaagaagag
ataaatattgatcctcttcctgaatctgaaatttcttcagacaacatgattttaagtgag
ccaggaaacatgggagacgaattacctgggcagaacattgattctagtaagcaccaagga
gaggcatgggctcttgttggtggtaatgacgagattgtcagtcacttttatgaacttgtt
cctgatatggccattgacttcccttttgagttggatagcttccagaaagaggccatatat
catcttgagagaggtgagtctgtttttgtagctgctcatacatcagctggaaagacggtc
gttgcagaatatgcatttgctttggcatccaaacactgcacaagggctgtctatactgct
ccaataaaaaccatcagcaaccagaagtacagggacttttgtgggaagtttgatgtaggc
cttcttactggagatgtaagcttgaagccggaagcatcttgtctcatcatgactactgag
atattaaggtcaatgctttacagaggtgctgatatcatccgcgacattgaatgggttata
tttgacgaggtgcattatgtcaatgatgctgaaagaggtgttgtgtgggaggaagttatc
atcatgcttccaagacatgtcaatattatcctcctttcagcaacggtcccaaacacaatt
gaatttgctgattggattggtcgaacaaaacaaaagaagatccgtgttacagggacaaca
aaaagacccgttcctcttgagcactgcttgttctactctggagagttgtacaaagtctgt
gagagtgatacttttttgcctcagggattcagagcagttaaagatgtttataagagaaaa
aaatcaagtgctggcatgggacagtctggaacaaaagttggagttccatttgctcaagct
ggaagccaatctagacaacatgatagttctagtcgagggaaaattcagaagcactcggga
catcagatcactcacagttcttatggaactagtgggatgaaccatagtcattcaggacta
aggagatcagagtcatctttatggctatcactcgtaaacaaactttcaaagaactccctt
ttgcctgtggtgattttctgcttttcaaagaaccgtgttgataaatcagcagataacatg
actgggactgacctgacaactagttctgagaaaagtgagataaaggtcttctgtgataag
gcgttttcaaggctaaagggttctgataggaatcttccacaagttgtccgagtccaaaac
ctgctaaggagaggcattggtgtgcatcatgctgggcttcttcctattgtaaaagaagtt
gtcgagatgctcttttgccgtggcgtgatcaaggttttattctccactgagacatttgct
atgggagttaatgctccagcaagaacagttgtctttgataccctgagaaagtttgatggc
aaggacttcaggaggttgcttccaggagaatatattcaaatggctggccgtgctggcagg
agaggcttagataagattggtactgttattgttatgtgccgtgatgaaattccagaagaa
agtgacttgaagcaagtaatggttggaaaaccaacacggcttgaatctcagtttcgcttg
acttataccatgatacttcatcttcttcgtgtggaagaattaaaggtggaggacatgctt
aaaagaagctttgctgaatttcatgcacaaaagaacttgccagagaaagagcgtcttctt
ttgcaaaagctacgccaaagtactaaaaaaattgaatgtataaaaggtgagcctgcaata
gaagaatattttgagatggcgtcagaagctgaaacacacagacaacacattttagaggct
gtcttgcaatcacacactgctcaacaatttctttcgccaggaagagtggtggttgtcaaa
tcacaatcagcagaagatcacttgcttggcactgttttgaagacgccttctgctgctaat
aaacaatatatcattttagtattgattgctgatattgcttcgcaagctccatcgatgtcc
tcgaacaaattgcaagaggaagaaagtcaaaattttcaacaaggttattttattactccg
aaaggaaaacgcagcatggatgaagagtacttttcgtccgtcagttctcgtaaaggatct
ggtgcaataaatataaagttgccatactatggtagtgcttccggtacgaactacaaagtt
atagcaatagataataaggacatcgtgtctatttgcaattgcaaaataaagatcgatcaa
gtgcgacttctagaggatcccagcaatattgcttactcaaaaactgttcagcaactgcta
gaaaagaaacatgatgggaacaagtatcctccagcgctagatgctgtaaaagatctcaag
ttgagggacatggatctcgtgcaaaggtatcatagctacaataaattgttgcaaaatatg
gctgagaacaaatgccatggatgtataaagtttaatgagcatatcatgttgataaaggag
caaaacaggcacaaagaagaagttaacgctttaaaatatcaaatgtcagatgacgcactc
cagcaaatgccagattttcaaggccggattgatgtgctgaaggagatctattgtattgat
tctgatcttgttgttcaactaaagggccgagtggcctgtgagatgaactctggggaggaa
ttgatatgcacagaatgtttgtttgagaaccaattggatgatttagaagctgaagaagcg
gttgcaattatgtcatctcttgttttccaacagaagaacacttctgaaccatcacttact
cctaagctggcttatgctaaaaggaggttatacgatacagcagttagattggggcagctc
caatcgcagtttaaactagctattgatcctgtggaatatgcacgagagaacctcaagttt
ggtcttgttgaagttgtatatgaatgggcaaaggggacaccattcgcagatatatgtgaa
ctcactgatgtgcccgaaggtctcatagtaagaactatcgtgagactggatgaaacatgt
cgtgagttcaagaatgcagcctcaataatgggcaactctgcgctctataagaagatggaa
acagcttccgatgctataaagcgtgacattgtttttgcagctagtttgtatgtaacagga
gtttga
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integrated database retrieval system
