Musa acuminata (dessert banana): 135622491
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Entry
135622491 CDS
T03447
Name
(RefSeq) uncharacterized protein LOC135622491
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
mus
Musa acuminata (dessert banana)
Pathway
mus03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mus00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135622491
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mus03019
]
135622491
03041 Spliceosome [BR:
mus03041
]
135622491
Messenger RNA biogenesis [BR:
mus03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
135622491
Spliceosome [BR:
mus03041
]
Complex B
Other components
Prp19-related factors
135622491
Complex C
135622491
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
TPR_14
HAT_PRP39_C
Suf
TPR_19
Mad3_BUB1_I
TPR_12
TPR_2
TPR_15
UTP6_C
TPR_5
PPR
Motif
Other DBs
NCBI-GeneID:
135622491
NCBI-ProteinID:
XP_064980463
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All DBs
Position
BXJ2-9:complement(2905648..2913128)
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AA seq
912 aa
AA seq
DB search
MAVTPATGAAEISPDLYPSEEDLPYEEEILRNPFSLKLWWRYLIARSSAPFRRRAVIYER
ALKALPGSYKLWHAYLRERIDAVRGRPVSDPAFDSLNNTFERALVTMHKMPRIWLMYLAS
LSEQRLLTRGRRTFDRTLRALPVTQHDRIWEPYLALVSLPGVPVETSLRVFRRYLLFDPS
HIEDFINFLIASRRWQEAAERLAGVLNDDSFHSIKGKTRHQLWLELCDILTRHATEVSGL
KVDAIIRGGIRRYTDEVGRLWTSLADYYVRRGLYEKARDIFEEGIQTVTTVRDFSVIFES
YAQFEQSALAAKIETAEEEQEEDGEGEEDGRRDGLSKLTKKFLDGFWLNDDDDTDLRMAR
FENLLSRRPELLNSVLLRQNPHNVEQWHRRVKIFENDPAKQVFTYIEAVRTVDPMKAVGK
PHTLWIAFARLYESHNDLQNSRDIFEKAVNVNYKTVDHLATVWCEYAEMELRHKNFGRAL
ELMRKATAEPSVEVKRRVAADGNEPVQMRLHKSLRLWSFYVDLEESLGSLESTRAVYERI
LDLRIATPQIILNYAFLLEENKYFEDAFKVYERGVKIFKYPHVKDIWVTYLSKFVKRYGK
TKLERARELFEHAVEQAPANEVKPIYLQYAKLEEEYGLAKRAMKVYDQAVKAVPDNEKLS
MYEIYIARAAAIFGVPKTREIYEQAIESGLPDNDAKKMCLKYAELERNLGEIDRARAIYV
FASQFADPRSDPDFWKVWKDFEIQHGNEDTFREMLRIGRSVSASYSQTHFILPEYLMQKD
QKLNLEEAVDTLKRAGVPEDEMATLERQLAPAAANSPVKNGGRMVNFVSAGSESQSDGGI
RLTANNEDIELPEESDSEDDKIEIAQKNVPASVFGDLAEIVAKDEDKGADAADNGGSSLL
GALERIKRQRRQ
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgacgccggcgacaggggcggcggagatatcgccggacctgtacccgagcgag
gaggatttaccctacgaggaggagatcctccgcaaccccttcagcctgaagctttggtgg
cgctaccttatcgcccgatcctccgcaccattccggcgacgcgccgtgatctatgagcgc
gccctcaaggccctgccgggcagctacaagctgtggcacgcctacctccgcgagcgcatc
gacgccgtccgtggccgtcccgtctccgacccggccttcgactccctcaacaacaccttc
gagcgcgcccttgtcaccatgcacaagatgccccgcatctggctcatgtacctcgcttcc
ctttccgaacagcgtctcctaacccgcggccgccgcaccttcgatcgcaccctacgcgct
cttcctgtcacccagcacgaccgcatctgggagccctacctcgccctcgtctctctcccc
ggcgtccccgtcgagacctctctccgcgtcttccgccgctacctcctcttcgacccgtcc
cacatcgaggacttcatcaacttcctcattgcctcccggcgctggcaggaggccgccgag
cggcttgcaggtgtgctcaacgatgacagcttccactccatcaagggcaagacccgacat
cagctgtggctcgagctctgcgacattctcacccgccacgccactgaggtatcgggcctc
aaggtcgacgccatcatacgtggtggcatccggcggtacaccgatgaggtcgggcgcctg
tggacgtcccttgcggattactatgttcgcaggggtttgtacgagaaggcgagggacatc
tttgaggagggcattcagactgtgactacggttagggacttcagtgtcatatttgagagt
tatgcgcagtttgagcagagcgcccttgctgcaaagatcgagacagccgaggaggaacag
gaggaggatggggaaggagaggaggatggcaggagagatggtttgtcaaagcttactaag
aaattcctggatggcttctggttgaatgatgacgacgacaccgatctcaggatggcaagg
tttgagaaccttctctcccgaaggccagagctccttaacagtgtgctcctacggcagaat
cctcacaatgtggagcagtggcacaggcgagtgaaaatttttgagaatgaccccgcaaag
caggttttcacctatatagaggcagtgagaacagtcgatcccatgaaagcagtgggtaag
ccccacacactttggattgcctttgcacggctgtatgagagccacaatgatcttcagaat
tccagagatatttttgagaaggctgtgaatgtgaactacaagactgttgaccatctagca
actgtttggtgtgaatatgctgaaatggagttgaggcacaagaactttggaagggcactt
gagctgatgagaaaggccactgcagaaccctcagttgaagtcaagcgtagagttgctgct
gatggtaacgagcctgtacaaatgaggctgcacaaatctttgaggctttggagcttttat
gttgatcttgaggagagcctggggtcactggaatcaactcgagctgtttatgagagaatt
cttgatttgagaatagcaactccccaaattattctaaattatgctttccttctcgaggag
aacaaatactttgaagatgcatttaaggtttatgagagaggtgtgaaaatatttaagtat
ccgcatgttaaagatatatgggttacgtacctatccaagtttgtcaaaagatatggaaag
accaagttggaacgtgcaagagagctttttgagcatgcagttgagcaggcacccgcaaat
gaggtgaagccaatatatctgcagtatgctaaactggaggaagaatatggtcttgcgaag
cgtgcaatgaaggtctatgatcaagcagtgaaggctgtccctgacaatgaaaaattgagc
atgtatgagatttacatagctcgagcagctgcaatttttggtgttcccaaaactagagag
atatacgagcaagcaattgaatcaggtctgcctgataatgatgcaaagaaaatgtgcttg
aaatatgccgaacttgaaagaaatctaggagaaatagatcgtgctcgtgcgatctatgta
tttgcatcacaatttgcagatccacggtctgatcctgatttctggaaagtatggaaagat
tttgagattcaacatggtaatgaagataccttcagggaaatgcttcgcattggccgcagt
gtttctgccagttatagtcagacacatttcattcttcctgaatacttaatgcaaaaggat
cagaagctaaatttggaagaagcagtggatactctaaagcgtgcaggcgtccctgaagat
gaaatggccactctagaaaggcaattggctcctgcagctgccaattctcctgttaagaat
ggtggcagaatggtaaactttgtcagtgctggatctgagtcacaatctgatggtggtata
cgactgactgcaaacaatgaggatatcgagttgccagaagagagtgattcggaggatgat
aaaattgaaattgcccaaaagaatgtccctgcttctgtatttggggacctcgcagaaata
gttgctaaggatgaggacaagggagctgatgctgcagataatggtggcagtagtcttcta
ggagcacttgagagaataaagaggcaaaggcggcaatga
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