Musa acuminata (dessert banana): 135623342
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Entry
135623342 CDS
T03447
Name
(RefSeq) tetratricopeptide repeat protein SKI3-like isoform X1
KO
K12600
superkiller protein 3
Organism
mus
Musa acuminata (dessert banana)
Pathway
mus03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mus00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
135623342
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mus03019
]
135623342
Messenger RNA biogenesis [BR:
mus03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
135623342
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_11
TPR_1
TPR_16
TPR_8
TPR_14
TPR_CcmH_CycH
TPR_19
TPR_7
ARM_TT21_C
TPR_9
BTAD
MIT_C
TPR_12
Motif
Other DBs
NCBI-GeneID:
135623342
NCBI-ProteinID:
XP_064982268
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Position
BXJ2-9:complement(29693472..29748107)
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AA seq
1199 aa
AA seq
DB search
MHPEMSRPQGDEDLLRQLQETLDSDPDNPSHHYNIGLFLWKKGEAVDDQADQSKQLRERA
AEHFLASAKLNPSDGVAFRFLGHYYSTVSVDAQRSAKCYQRAVALNPHDSEAGEALCDLL
DGEGKESLEIAVCREASEKSPRAFWAFQRLGYLQVHQRRWSEAVQSLQHAIRGFPACADL
WEALGLAYHRLGMFTAAVKSYGRAIELENSRIFALVESGHIQLMLGSFRKRNLWLQGVEQ
FRCAMELAPHNISAHLGLASGLLDWSKDCIKSGAFGWAADLLQEASEAAKVSTCLSGNLY
SAWKLHGDIKIAYAKCYPWGTGRIGYEIDEDLLKSSIISWKKTCYSAAISAKHSYQRALH
LAPWQANIYTDIAISVDFIGYLEERNNNYLEIWQLPERMALGGLLLEGVNKEFWVLLGCL
ASSDALKQHALIRALQLDVSLSSSWAYLGTLYRNSGEKQLACQAFDRARSIDPSLALPWA
GMSASYQDGLCSTNEAFESCLWAVQTLPLAEFQVGLCALAVLSGHLSSPLVIGAIGQAVQ
RAPYLPESHNLHGLVCESRTDYQSAIVAYQKARCALRMFPNFKHDLQSSFTDVSVNLARS
LCKAGHAIDAAQECENLKKEGFLDSKGLQIYAVALWKLGQYNLALTVARKLAENVSTMKQ
TCAAASLGLICTLMYNISGYDSVVRTIRKFPSEFLQNTRMSLIVCALNALDTNKQLQSLL
PTISQAAASHGIAIEIHSITAINKLITQESPQTVAIDRGVDYLRKALHMYPNSLLIRSHL
GLLLLSSGDWMALQKAARCAVIPTGHQHPVKKGFRLPYEIHGAMAVACGSICSTNPKSSF
PTCNDGLMHGARHLHLLQRWLHQEPWNQNARYLLALNVFQKAHEENFPQQLCIISKRLVL
DALSTEEFLGDNKLSQSRSLLLLCASEISLQSGDSVGCIHHASNALGLLPTNSDMFFAHL
QLCRGYAVQEDYSNLRNEYTKCLQMKTIHPICWILLKYFESRYSLQNNLDIIHTNFQACA
ARKGSSSNNWSANFELVCAQCYLWDQDYFHAEQTLARACVANMDSCLLLCHGAICMELVR
QQAGLQFLSRAISSLTKAQKCSPMFLPIVSLLLAQAEASLGAKAKWEKNLSLEWFAWPAE
RRPAELYFQMHLLARQSSTVSNQDSGVGSTQSPERWILRAIHLNPSCLRYWRILHKCYS
NT seq
3600 nt
NT seq
+upstream
nt +downstream
nt
atgcacccagagatgtctcgaccgcagggcgacgaagatctccttcggcagctgcaggaa
accctagattccgatcccgataatccgtcgcaccattataacatcggcctcttcttgtgg
aaaaagggcgaagcagtagatgatcaagctgaccaatcgaagcaattaagggagagagca
gccgagcattttttggcctctgcgaagctgaaccctagtgacggcgtcgcattccgcttt
ctggggcattactacagcacggtttccgtcgatgcacagaggtctgcaaagtgctaccag
agggctgtcgcccttaatccccatgattctgaagctggcgaggcgctgtgtgatctgctg
gatggagaaggaaaggaaagcttggagattgcggtgtgtagagaagcatctgagaagtct
cccagagctttctgggcattccagagattgggatacttgcaggtccaccagaggagatgg
tctgaggcagtacagagccttcagcatgctatacgaggattcccggcatgtgctgacttg
tgggaagcgcttggtcttgcctaccatcgcttgggcatgtttactgcagctgttaagtcg
tatgggcgagccattgagttggagaactcaagaatatttgcattggtggagagtgggcat
attcagctaatgcttggttctttcagaaaacgaaatctatggttacagggagttgaacaa
tttcgatgtgctatggaacttgcaccacacaatatatctgcacaccttgggcttgcttct
gggctgcttgattggtcaaaagattgcattaaatctggagcatttggttgggcagctgat
ctcttacaagaagcatcagaagctgcaaaagtcagtacctgtttgtctggaaatttatat
tctgcttggaagttgcatggggacatcaagattgcatatgcaaaatgctatccatgggga
actggaaggattggatatgaaatagatgaggatctcttgaaatcttccatcatcagctgg
aaaaagacatgctattcagctgcaattagtgctaaacactcgtatcagcgggctttacac
ttggctccatggcaggctaatatttacactgatattgcaatctctgttgattttattggc
tatctagaagagagaaacaacaattatttggaaatttggcagctacctgagaggatggcc
ctaggtggcttgttgctggaaggagttaataaggagttctgggttttgttgggatgtctg
gctagcagtgatgctctgaagcaacatgctttgattagagcgttgcagttggatgtgtct
ctttcctcatcatgggcatatctgggaacgctctatagaaactcgggagaaaagcaattg
gcatgtcaagcatttgatcgtgcaagaagcatagatccttctttggcattaccatgggct
ggcatgtcagctagttatcaggatgggctttgctcgacaaatgaagcttttgaaagctgt
ctgtgggctgtgcagacactgcctcttgctgaatttcaagttggtctttgtgcacttgca
gttctttctggtcatctgtcatccccgctggtaattggagccatagggcaggccgttcaa
agggctccgtacttacccgagtcccataatttacatggcttagtatgtgaatcacggact
gattatcagtctgcaattgttgcttatcagaaggcacgatgtgctttgagaatgtttccc
aacttcaagcatgatcttcaatcttccttcactgatgtatcagttaaccttgctagatca
ctttgtaaggccggacatgcaattgatgctgcacaagagtgtgaaaatttgaagaaagaa
ggattccttgatagtaagggcttgcaaatatatgctgttgcattgtggaaacttggacaa
tacaacttagctcttactgtggcgagaaagttggctgagaatgtctcaaccatgaaacag
acatgtgcagctgcttcccttgggttgatatgcacactaatgtacaacatttcaggatat
gactctgtagttagaacaattagaaaatttccaagtgagtttttgcaaaatacaagaatg
agtctcatcgtctgtgcattaaatgctttagacacaaataaacaactgcagtcgcttctg
ccaaccatttctcaagctgctgcttctcatggtattgccattgaaatacattccattacc
gctattaacaaattgataactcaggagtctcctcaaactgtagccattgacaggggagta
gattacctaagaaaggcccttcatatgtatcctaacagtcttttaataagaagccatctt
ggtttgcttctactgtctagtggagattggatggctcttcagaaagcagccaggtgtgct
gtcattccaactggtcaccagcaccctgtcaagaaaggatttagactaccatatgaaatt
catggtgctatggcagttgcttgcggttccatctgttccaccaacccgaagtcttctttc
cctacctgcaatgatgggcttatgcatggagctagacacttgcacttgcttcaaagatgg
ttgcatcaagaaccatggaaccaaaatgctcgttacttacttgctcttaatgttttccag
aaagctcatgaagagaacttcccccaacaactttgcattatttcaaaacggttggtttta
gatgctctctctacagaagagtttctgggggacaataagctatctcagtctcggagtctc
ctactcctctgtgcatcagaaataagtttgcagagtggtgactctgttggatgcatacat
catgcatctaatgcattaggtcttcttcctaccaatagtgatatgttttttgcacacttg
caattatgccgtggatatgcagtgcaggaggactattcaaaccttaggaatgagtacacc
aagtgcttgcagatgaagaccattcatccgatttgttggatattactaaaatattttgaa
tctagatacagtttgcagaataatttggacataatacataccaactttcaggcatgtgca
gccaggaaaggaagttcctccaacaattggtctgctaactttgaattagtttgtgctcaa
tgttatttgtgggatcaggactacttccacgcagagcaaaccttggcacgtgcttgtgta
gcaaatatggacagctgccttctactttgtcatggtgccatctgtatggaacttgttagg
cagcaggcaggtcttcagtttctgtctcgtgcaattagcagcctgacaaaagctcagaag
tgttcgcctatgttcttgcccattgtttcactgttgttggctcaagcagaagcaagcctt
ggagcaaaagccaagtgggagaagaaccttagccttgaatggtttgcctggccagcagaa
aggaggccagctgagttgtatttccaaatgcacttgcttgcaaggcaatccagtacagtc
tccaaccaagattctggcgtagggtcgactcaaagcccagagaggtggatactacgagcc
atacatttgaacccctcatgtttgagatactggagaatacttcacaagtgttacagctag
DBGET
integrated database retrieval system
