KEGG   Musa acuminata (dessert banana): 135623492
Entry
135623492         CDS       T03447                                 
Name
(RefSeq) transcription initiation factor TFIID subunit 5-like isoform X1
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
mus  Musa acuminata (dessert banana)
Pathway
mus03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:mus00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    135623492
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mus03021]
    135623492
   03036 Chromosome and associated proteins [BR:mus03036]
    135623492
Transcription machinery [BR:mus03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     135623492
   Coactivators
    SAGA/TFTC/STAGA complex
     135623492
Chromosome and associated proteins [BR:mus03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     135623492
    STAGA complex
     135623492
    TFTC complex
     135623492
    SAGA complex
     135623492
    SLIK complex
     135623492
SSDB
Motif
Pfam: Beta-prop_THOC3 WD40 Beta-prop_WDR5 Beta-prop_WDR3_1st WD40_Prp19 TFIID_NTD2 WD40_WDHD1_1st Beta-prop_WDR3_2nd WD40_CDC20-Fz WD40_Gbeta Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_2nd EIF3I Beta-prop_EML_2 Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd WDR55 Beta-prop_WDR90_POC16_2nd NBCH_WD40 ANAPC4_WD40 Beta-prop_WDR36-Utp21_1st Beta-prop_EML Beta-prop_IFT122_1st WD40_MABP1-WDR62_1st Beta-prop_Aladin Beta-prop_RIG_2nd Beta-prop_TEP1_C WDR90_beta-prop_4th Beta-prop_WDR75_1st Beta-prop_IFT140_1st Beta-prop_VPS8 Beta-prop_WDR19_1st Beta-prop_DCAF4 Beta-prop_EIPR1 Beta-prop_SCAP Beta-prop_WDR41 WD40_RFWD3 Beta-prop_SPT8 Beta-prop_Vps41 Ge1_WD40 Beta-prop_Nup120_160 Beta-prop_WDR35_TULP_N Tricorn_2nd LisH_PAC1 Beta-prop_HPS5 WD_LRWD1 Beta-prop_NWD2_C Beta-prop_DCAF12 LisH Cytochrom_D1 DUF4329
Other DBs
NCBI-GeneID: 135623492
NCBI-ProteinID: XP_064982591
LinkDB
Position
BXJ2-9:complement(43155569..43183893)
AA seq 655 aa
MEEEEIQKAVAAYLRKKGFTNTELALQEEQNRVSFSSNSDHSVSRLENGPVRYSDGYSKL
RLWAYSSLDLYKHELLRVLFPVYIHCFMDLVAGGHVHEARNFFHTFREDHESMHLRDLQK
LEGILSPLHLEEIELSRSFRQNKFKIKMCEYSYDLLLQYLQKTQSFTMRGVINEHIDFEV
SPGQPTSSSGDADFVTIEGRNNDLVRQINQKEIHWGVLEDSLEQHLERPVSDSEKAESAN
KEVNPEDNKKRPLDGGKQGIPVKMVKKDKLVNMVGKNVRSETSAVSVAPRVKPELTLPTT
LVEVEQAILEDLRSRVQLNSLALPSISFYTFVNTCNRLNCSSISQDGSLVAGGFSDSSLK
VWDISKIGQFVKTSSLHGEKESAKNENLPATEEGKKPYTLFHGHSGPVYSATFSPFGEFL
LSSSSDSTIRLWSTKLNTNLVCYKGHNYPVWDVQFSPVGHYFASSSHDRTARIWSMERIQ
PLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQSGECVRIFIGHRSMILSLAMS
PDGRYMASGDEDGTIMMWDLSSGRCVSPLVGHSSCVWTLAFSCEGTLLASGSADCTIKLW
DVTNSTRASRMESKSSSSNRLRLLKALPTKSTPVYTLQFSRRNLLFAAGALSKCS
NT seq 1968 nt   +upstreamnt  +downstreamnt
atggaggaggaagagatccagaaagcggtggccgcttacctgaggaagaagggcttcacg
aatacagagctcgcccttcaggaagagcagaatcgcgtctccttttcttccaactccgat
cactcagtatccagattagagaatggtccagtacgatatagtgatggttatagcaagcta
cgcttgtgggcctacagttcactggacttgtacaagcatgagctgcttcgtgtgcttttt
ccagtttacatacactgtttcatggatcttgtggcaggaggacacgtacatgaagctcga
aattttttccacacattccgtgaagatcatgaatcaatgcatttaagggaccttcaaaag
ctcgaaggaatcctttctcccttacatttggaggaaatcgaattgtctcgttcttttagg
cagaacaaattcaaaataaaaatgtgtgagtattcgtatgacctccttctgcagtacctt
cagaaaacacaatcttttaccatgcgtggggtaatcaatgaacatattgattttgaagtt
tctcctggacagccaacctcgagttctggtgatgcagactttgtgaccatagaagggaga
aataacgatctggttagacagataaatcagaaagaaatacactggggggtgcttgaggac
tctttagaacagcatttggagaggccagtttcagattctgagaaggctgagagtgcaaac
aaagaagtgaatcctgaggataacaagaagaggccacttgatggaggaaagcagggtatt
cctgtcaaaatggttaaaaaggacaaactcgtcaacatggtggggaaaaatgttcgctca
gagacgagtgcagtgtccgtggccccacgtgtgaaaccagagctaactcttcctacaacg
cttgtggaagttgaacaagctattctggaggacctacgcagtcgagtacaattaaatagc
ttggcactgccatctattagcttctataccttcgtaaacacttgtaacaggttaaattgt
tcatctatatctcaagatggctcattagttgccggtggattttcagattcatccctgaag
gtctgggacatttcaaagattggccaatttgtaaaaacctctagtttgcatggagaaaaa
gaatctgcaaaaaatgagaatttgcccgcaactgaggagggcaaaaaaccctataccttg
tttcatggtcactctggacctgtttattcagccacatttagtcctttcggggaatttcta
ttgtcatcatcatcagactcaacaatccgattatggagcaccaagctcaataccaatctt
gtctgctacaaaggtcataattatcccgtgtgggatgttcaattcagtcctgttggccat
tattttgctagttcttcacatgatcggacagctagaatttggtcaatggagagaatccaa
cccctaaggataatggctggacatctttctgatgttgattgtgttcaatggcatgcaaat
tgtaattatattgcaactggttcgagcgacaaaacagtcagattatgggatgtacaaagt
ggggagtgtgtacgcattttcattggtcacaggagtatgatattgtcattggcaatgtct
cctgatgggcgttatatggcttctggtgatgaagatggtacaataatgatgtgggatctc
tcaagtggtcgttgtgtttcaccattagtaggacacagctcttgtgtttggacacttgct
ttcagttgtgaagggacactacttgcttctgggtctgctgactgcaccataaaattatgg
gatgtcacgaacagcacgagggcatcaaggatggagagcaaatctagcagctcaaaccgt
ttgcggctgttaaaagctctccctaccaaatctactcctgtttatacattacagttctct
agaaggaatcttctgtttgccgctggagcactgtcaaaatgctcatga

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